CK937093

Overview
NameCK937093
Unique NameCK937093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_SORBI (Photosystem I assembly protein ycf4 OS=Sorghum bicolor GN=ycf4 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.809e-30
Identity = 66/85 (77.65%), Postives = 73/85 (85.88%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDEN-LTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPG  RRIFL+FL++DIQSIRI+VKEG+Y RR+LY+E RG G IPL RTDE   TPREIEQKAAELAYFL VPIE F
Sbjct:  101 IVCIFRWGFPGIKRRIFLQFLVRDIQSIRIQVKEGLYPRRILYMEIRGQGVIPLTRTDEKFFTPREIEQKAAELAYFLGVPIEVF 185          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_LOLPR (Photosystem I assembly protein ycf4 OS=Lolium perenne GN=ycf4 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.792e-30
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDEN-LTPREIEQKAAELAYFLRVPIEGF 595
            IVCIFRWGFPG  RR+FL+FLM+DIQSIRI+VKEG+  RR+LY+E RG G IPL RTDE   TPRE+EQKAAELAYFLRVPIE F
Sbjct:  101 IVCIFRWGFPGIKRRVFLQFLMRDIQSIRIQVKEGLSPRRILYMEIRGQGVIPLTRTDEKFFTPREMEQKAAELAYFLRVPIEVF 185          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_BRAOL (Photosystem I assembly protein ycf4 OS=Brassica oleracea GN=ycf4 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.298e-29
Identity = 69/85 (81.18%), Postives = 72/85 (84.71%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTP-REIEQKAAELAYFLRVPIEGF 595
            IV IFRWGFPGK+RRI LRFLMKDIQS R EVKEG+ ARRV Y+E RG GAIPL RTDEN T  REIEQKAAELAYFLRVPIE F
Sbjct:  101 IVRIFRWGFPGKSRRIVLRFLMKDIQSDRTEVKEGVSARRVPYMEIRGQGAIPLIRTDENFTTRREIEQKAAELAYFLRVPIEVF 185          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_CYCTA (Photosystem I assembly protein ycf4 OS=Cycas taitungensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.434e-28
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVC+FRWGFPG+NRR FLRFLMKDIQ+I++EV+EG+Y RRVLY+E +G   IPL RT ENLT RE+EQKAAELA FLR+ IE F
Sbjct:  101 IVCLFRWGFPGRNRRTFLRFLMKDIQAIKMEVQEGLYPRRVLYMEIKGQRDIPLARTGENLTLREMEQKAAELARFLRISIEVF 184          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_CUSGR (Photosystem I assembly protein ycf4 OS=Cuscuta gronovii GN=ycf4 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.704e-27
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIE 589
            ++CIFRW FPG+NRR+ LRF MKDI+SIRIEVKEG Y RR+LY++ RG  AIPL RTDE LTP EIE+KAAELA FL VPIE
Sbjct:   93 VICIFRWVFPGRNRRLLLRFFMKDIRSIRIEVKEGFYTRRLLYMDIRGQKAIPLTRTDEVLTPVEIEKKAAELASFLCVPIE 174          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_CUSOB (Photosystem I assembly protein ycf4 OS=Cuscuta obtusiflora GN=ycf4 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.226e-27
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIE 589
            ++CIFRW FPG+NRR+ LRF MKDI+SIRIEVKEG Y RRVLY++ RG   IPL RTDE LTP EIE+KAAELA FL VPIE
Sbjct:   93 VICIFRWVFPGRNRRLLLRFFMKDIRSIRIEVKEGFYTRRVLYMDIRGQKGIPLTRTDEVLTPVEIEKKAAELASFLCVPIE 174          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_PINTH (Photosystem I assembly protein ycf4 OS=Pinus thunbergii GN=ycf4 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.482e-26
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVC+FRWGFPG NRRIF RFLMKDIQ I++E++EGI  RRVLY+E +G   IPL RT +N+  REIEQKAAE A FLRV IEGF
Sbjct:  101 IVCLFRWGFPGINRRIFPRFLMKDIQMIKMEIQEGISPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFLRVSIEGF 184          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_PINKO (Photosystem I assembly protein ycf4 OS=Pinus koraiensis GN=ycf4 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.160e-26
Identity = 59/84 (70.24%), Postives = 67/84 (79.76%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IVC+FRWGFPG NRRIF RFLMKDIQ I+ E++EGI  RRVLY+E +G   IPL RT +N+  REIEQKAAE A FLRV IEGF
Sbjct:  101 IVCLFRWGFPGINRRIFSRFLMKDIQMIKTEIQEGISPRRVLYMEIKGRQDIPLTRTGDNVNLREIEQKAAESARFLRVSIEGF 184          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_ANGEV (Photosystem I assembly protein ycf4 OS=Angiopteris evecta GN=ycf4 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.303e-24
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEGF 595
            IV +FRWGFPG+NRRI +RF++KDIQ+IR+E++EG   RRVLY+  +G   +PL R DE LT RE+E+KAAELA FLRV IEGF
Sbjct:  101 IVYLFRWGFPGENRRICIRFMIKDIQAIRMEIQEGFSPRRVLYLRIKGQQDVPLTRLDEELTLREMEEKAAELARFLRVSIEGF 184          
BLAST of CK937093 vs. ExPASy Swiss-Prot
Match: YCF4_MARPO (Photosystem I assembly protein ycf4 OS=Marchantia polymorpha GN=ycf4 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.008e-24
Identity = 56/83 (67.47%), Postives = 68/83 (81.93%), Query Frame = 2
Query:  344 IVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIYARRVLYIESRGLGAIPLNRTDENLTPREIEQKAAELAYFLRVPIEG 592
            I  IFRWGFPGKNRRIF++FL+KDIQSIR+EV+EG  +RRVLYI+ +G   IPL+R +E  T RE+E KAAELA FL+V IEG
Sbjct:  101 IFSIFRWGFPGKNRRIFIQFLIKDIQSIRMEVQEGFLSRRVLYIKIKGQPDIPLSRIEEYFTLREMEDKAAELARFLKVSIEG 183          
The following BLAST results are available for this feature:
BLAST of CK937093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
YCF4_SORBI2.809e-3077.65Photosystem I assembly protein ycf4 OS=Sorghum bic... [more]
YCF4_LOLPR4.792e-3076.47Photosystem I assembly protein ycf4 OS=Lolium pere... [more]
YCF4_BRAOL5.298e-2981.18Photosystem I assembly protein ycf4 OS=Brassica ol... [more]
YCF4_CYCTA3.434e-2872.62Photosystem I assembly protein ycf4 OS=Cycas taitu... [more]
YCF4_CUSGR1.704e-2773.17Photosystem I assembly protein ycf4 OS=Cuscuta gro... [more]
YCF4_CUSOB2.226e-2773.17Photosystem I assembly protein ycf4 OS=Cuscuta obt... [more]
YCF4_PINTH5.482e-2670.24Photosystem I assembly protein ycf4 OS=Pinus thunb... [more]
YCF4_PINKO7.160e-2670.24Photosystem I assembly protein ycf4 OS=Pinus korai... [more]
YCF4_ANGEV2.303e-2464.29Photosystem I assembly protein ycf4 OS=Angiopteris... [more]
YCF4_MARPO3.008e-2467.47Photosystem I assembly protein ycf4 OS=Marchantia ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004514_D10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937093 ID=CK937093; Name=CK937093; organism=Citrus sinensis; type=EST; length=825bp
NCGGCCGGGATACTTATATACAATTATNNNAGTATACTTAATATACATTT
ATATACGAATTAGAATATGATAATAATTAGAATATGAATTCTAATTATTA
TAGGATATCCTTATACCAATAACAGGTACAAATATTAAATCGAGGTACCC
TTTCTATGACAATTCTCAACAGCTTTCCCTCTATTTTTGTGCCTTTAGTG
GGCCTAGTATTTCCGGCAATGGCAATGGCTTCGTTATTTCTTTATCTTGA
AAAAAATAAGATTTTGTAAATCCGATCGGATCAAGGTCAAATCTCGTCTA
GTTTTTTTCAAGACTTAGCGATGACGGATATCCATTTAGTAGAATAGTGT
GTATTTTTCGTTGGGGATTTCCTGGAAAAAATCGCCGCATCTTTCTACGA
TTCCTTATGAAAGATATTCAGTCCATCAGAATAGAAGTTAAAGAGGGTAT
TTATGCTCGTCGTGTCCTTTATATAGAAAGCAGAGGCTTGGGGGCCATTC
CCTTGAATCGTACTGATGAGAATTTGACTCCGCGAGAAATTGAGCAAAAG
GCTGCGGAATTGGCCTATTTCTTGCGTGTACCAATTGAAGGATTTTGAAA
AATGAACTGAAGAATAAACGCTTTCTTAGCAGGAGGAAACCCCCACGAAT
CCATTTTTCTTTAGCAAAACGGACTTGATTGAAGTTTCTTCCGAACGACC
TGTTGGACCAAAGCAAACGTGTACGGAACAGCCATAATCTAAAACGAAAC
CCTTTTCTTTTATACTTTCTTTTGTCTTTACTACTGACCAAAGAATTGGA
TCTCATAAAATGAGGACTTTTCCGT
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