EY665853

Overview
NameEY665853
Unique NameEY665853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.086e-12
Identity = 45/142 (31.69%), Postives = 71/142 (50.00%), Query Frame = 3
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTG 620
            +Y A A+ KLP  +F Y   GA  + TL+ N    S I  R R+L ++S++D++T + G K+SMP+ +AP  +  M    GE          G   TLS+ S   +E    + D    +F   V KD+  +   ++RA+  G
Sbjct:    8 DYRAAAERKLPPFLFHYADGGAYAEHTLRRNVADLSNIELRQRVLKNMSELDLSTELFGEKMSMPVGLAPVGLTGMYARRGEVQAAKAAAAKGIPFTLSTVSVCPIEEVAPAID-RPMWFQLYVLKDRGFMRNALERAKAAG 148          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = 3
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTGIQ 626
            +Y A AK KLP  +F Y   G+  + TL+ N +  + I  R R+L D+S++ + T + G K+++PI ++P  +  M    GE          G   TLS+ S   +E    S      +F   V KD+  +  +++RA+  G++
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYGEHTLRRNTDDLADIALRQRVLSDMSELSLETELFGEKMALPIALSPVGLTGMYARRGEVQAAQAAEAKGIPFTLSTVSVCPIEEVAPSIH-RPIWFQLYVLKDRGFMKNVLERAKAAGVK 150          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.056e-11
Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = 3
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTGIQ 626
            +Y A AK KLP  +F Y   G+  + TL+ N +  + I  R R+L D+S++ + T + G K+++PI ++P  +  M    GE          G   TLS+ S   +E    S      +F   V KD+  +  +++RA+  G++
Sbjct:    8 DYRAAAKAKLPPFLFHYIDGGSYGEHTLRRNTDDLADIALRQRVLSDMSELSLETELFGEKMALPIALSPVGLTGMYARRGEVQAAQAAEAKGIPFTLSTVSVCPIEEVAPSIH-RPIWFQLYVLKDRGFMKNVLERAKAAGVK 150          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 42/144 (29.17%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTGIQ 626
            +Y A A+ KLP  +F Y   GA  + TL+ N    + I  R RIL ++S + + T++ G K++MP+++ P  +  M    GE          G   TLS+ S   +E    + D    +F   V KD+  +   ++RA+  G++
Sbjct:    8 DYRAAAQAKLPPFLFHYIDGGAYAEHTLRRNTEDLAGIALRQRILRNMSDLSLETSLFGEKLAMPVILGPVGLTGMYARRGEVQAAKAAAQKGIPFTLSTVSVCPIEEVAPAID-RPMWFQLYVLKDRGFMRNALERAKAAGVK 150          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 42/144 (29.17%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTGIQ 626
            +Y A A+ +LP  +F Y   GA  + TL+ N    + I  R RIL ++S + + T + G K++MP+++AP  +  M    GE          G   TLS+ S   +E    + D    +F   V KD+  +   ++RA+  G++
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYGEHTLRRNTADLADIALRQRILKNMSDLSLETQLFGEKLAMPVVLAPVGLTGMYARRGEVQAARAAAQKGIPFTLSTVSVCPIEEVAPAID-RPMWFQLYVLKDRGFMRSALERAQAAGVK 150          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_ALCFA (L-lactate dehydrogenase [cytochrome] OS=Alcaligenes faecalis GN=lldD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 41/147 (27.89%), Postives = 73/147 (49.66%), Query Frame = 3
Query:  180 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTG 620
            I++  +Y   A+++LP  +F Y   GA  + TL+ N +  + +  R R+L D+S++D +  + G K+SMP+ ++P  +  M    GE          G   T+SS S   +E  +  R     +F   V KD+  +   ++RA+  G
Sbjct:    3 ISSSTDYRRAAQKRLPPFLFHYIDGGAYAEHTLRRNVDDLAEVALRQRVLKDMSQLDTSIDLFGEKLSMPVALSPVGLTGMYARRGEVQAARAADARGIPFTMSSVSVCPIE-EVAPRLSRPMWFQLYVLKDRGFMRNALERAQAAG 148          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 39/147 (26.53%), Postives = 72/147 (48.98%), Query Frame = 3
Query:  180 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTG 620
            +++  ++   A+ +LP+ +FDY   GA  + T+  N +  + I  R R+L+DVS +D +TT+ G + ++P+ +AP  +  M    GE          G    LS+ S   V+  + +      +F   V +D+  +  L+ RA   G
Sbjct:    3 VSSTTDFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVD-EVRAASATPFWFQLYVLRDRGFMRDLLARASAAG 148          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCN (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=lldD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 39/147 (26.53%), Postives = 72/147 (48.98%), Query Frame = 3
Query:  180 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTG 620
            +++  ++   A+ +LP+ +FDY   GA  + T+  N +  + I  R R+L+DVS +D +TT+ G + ++P+ +AP  +  M    GE          G    LS+ S   V+  + +      +F   V +D+  +  L+ RA   G
Sbjct:    3 VSSTTDFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVD-EVRAASATPFWFQLYVLRDRGFMRDLLARASAAG 148          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 3
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTGI 623
            +Y A A+ KLP  +F Y   GA  ++TL+ N    S I  R R+L ++S++ + T +    ++MP+ +AP  +  M    GE          G   TLS+ S   +E    + D    +F   V KD+  +   ++RA+  G+
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAID-RPMWFQLYVLKDRGFMRNALERAKAAGV 149          
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 3
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTGI 623
            +Y A A+ KLP  +F Y   GA  ++TL+ N    S I  R R+L ++S++ + T +    ++MP+ +AP  +  M    GE          G   TLS+ S   +E    + D    +F   V KD+  +   ++RA+  G+
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAID-RPMWFQLYVLKDRGFMRNALERAKAAGV 149          
The following BLAST results are available for this feature:
BLAST of EY665853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LLDD_PSEMY8.086e-1231.69L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_VIBCM1.056e-1129.17L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_VIBCH1.056e-1129.17L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_SERP51.801e-1129.17L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_ERWCT1.801e-1129.17L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_ALCFA1.801e-1127.89L-lactate dehydrogenase [cytochrome] OS=Alcaligene... [more]
LLDD_CAUCR3.073e-1126.53L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_CAUCN3.073e-1126.53L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_PSEAE6.845e-1128.67L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB6.845e-1128.67L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665853 ID=EY665853; Name=EY665853; organism=Citrus sinensis; type=EST; length=856bp
CCCACGCGTCCGATTTTATTTTCTCTTTGCTTTCTATTTCTTAAATCTCC
CTCTATAACTCAGTCTTTGTTCATCATCGTCTTCTCTCTACTGGTTTCTC
TGAATGCACTTTGCTGCACTGTCTTTGTAAACCTTAGATTAATTTAAGTA
GAAAACAGTCAACTGACAAGATGGGAGAGATCACAAATGTGATGGAGTAT
GAGGCCATTGCCAAGGAAAAGTTGCCAAAGATGGTGTTTGATTACTATGC
TTCAGGTGCAGAGGACCAGTGGACTTTGCAAGAGAACAGGAATGCTTTCT
CAAGAATCCTGTTTCGACCTCGCATTCTGATTGATGTAAGCAAAATAGAC
ATGAATACCACTGTCTTGGGCTTCAAGATATCGATGCCAATCATGATTGC
CCCAACAGCCATGCAGAAGATGGCTCATCCTGAAGGGGAGTATGCTACAG
CTAGAGCTGCATCGGCTGCTGGAACGATTATGACATTGTCTTCGTGGTCT
ACTTCTAGCGTTGAAAGAAGGTTGCTTTCACGGGACCTGGCATCCGCTTT
TTTCACCTCTATTGTGTACAAGGACAAGAATGTGGTTGCTCAGCTTGTGA
AAAGGGCTGAAAAAACCGGAATTCAAGGGCCATTGCTCCTAAAGTTGATA
CCCCCAAGCTTGGGTCGCAAAAAAAACTGAAATCTAAAAAAAAAATTCCT
TCTACCCCCTTTTTTGGAAATTTAAAAAATTTTCAGGGTTTGGAACCCTT
GGCCAAAAGGGAAAAAGGCAATGAACTTCGGGGATTTTGCGCCATAAGCT
GGCGGGCCAAAATAAATTCCCTCTATTTAATATGGAACCGACCGCCTAAT
CCGGAC
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