EY665853

Overview
NameEY665853
Unique NameEY665853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 3 
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTGI 623
            +Y A A+ KLP  +F Y   GA  ++TL+ N    S I  R R+L ++S++ + T +    ++MP+ +AP  +  M    GE          G   TLS+ S   +E    + D    +F   V KD+  +   ++RA+  G+
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAID-RPMWFQLYVLKDRGFMRNALERAKAAGV 149
[Close]
BLAST of EY665853 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.845e-11
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = 3 
Query:  195 EYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYXXXXXXXXXGTIMTLSSWSTSSVERRLLSRDLASAFFTSIVYKDKNVVAQLVKRAEKTGI 623
            +Y A A+ KLP  +F Y   GA  ++TL+ N    S I  R R+L ++S++ + T +    ++MP+ +AP  +  M    GE          G   TLS+ S   +E    + D    +F   V KD+  +   ++RA+  G+
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAID-RPMWFQLYVLKDRGFMRNALERAKAAGV 149
The following BLAST results are available for this feature:
BLAST of EY665853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LLDD_PSEA86.845e-1128.67L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA76.845e-1128.67L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-006-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665853 ID=EY665853; Name=EY665853; organism=Citrus sinensis; type=EST; length=856bp
CCCACGCGTCCGATTTTATTTTCTCTTTGCTTTCTATTTCTTAAATCTCC
CTCTATAACTCAGTCTTTGTTCATCATCGTCTTCTCTCTACTGGTTTCTC
TGAATGCACTTTGCTGCACTGTCTTTGTAAACCTTAGATTAATTTAAGTA
GAAAACAGTCAACTGACAAGATGGGAGAGATCACAAATGTGATGGAGTAT
GAGGCCATTGCCAAGGAAAAGTTGCCAAAGATGGTGTTTGATTACTATGC
TTCAGGTGCAGAGGACCAGTGGACTTTGCAAGAGAACAGGAATGCTTTCT
CAAGAATCCTGTTTCGACCTCGCATTCTGATTGATGTAAGCAAAATAGAC
ATGAATACCACTGTCTTGGGCTTCAAGATATCGATGCCAATCATGATTGC
CCCAACAGCCATGCAGAAGATGGCTCATCCTGAAGGGGAGTATGCTACAG
CTAGAGCTGCATCGGCTGCTGGAACGATTATGACATTGTCTTCGTGGTCT
ACTTCTAGCGTTGAAAGAAGGTTGCTTTCACGGGACCTGGCATCCGCTTT
TTTCACCTCTATTGTGTACAAGGACAAGAATGTGGTTGCTCAGCTTGTGA
AAAGGGCTGAAAAAACCGGAATTCAAGGGCCATTGCTCCTAAAGTTGATA
CCCCCAAGCTTGGGTCGCAAAAAAAACTGAAATCTAAAAAAAAAATTCCT
TCTACCCCCTTTTTTGGAAATTTAAAAAATTTTCAGGGTTTGGAACCCTT
GGCCAAAAGGGAAAAAGGCAATGAACTTCGGGGATTTTGCGCCATAAGCT
GGCGGGCCAAAATAAATTCCCTCTATTTAATATGGAACCGACCGCCTAAT
CCGGAC
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