CK937078

Overview
NameCK937078
Unique NameCK937078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.198e-30
Identity = 67/144 (46.53%), Postives = 94/144 (65.28%), Query Frame = 2
Query:  212 RILKELKDLQKDPPTS-CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 637
            RI KEL+D +++  +S     P ++++     TI GP  +PY GG F + I  P  YPF+PPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + STAR WT+ +A
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.176e-30
Identity = 57/145 (39.31%), Postives = 93/145 (64.14%), Query Frame = 2
Query:  203 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 622
            A +R++++ K +++D P   SA P+ +++  W A I+GP+D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K++Y     E+  +SW
Sbjct:    5 ARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 2
Query:  200 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 637
            +A +RI +E K++ K   TS        V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 2
Query:  200 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 637
            +A +RI +E K++ K   TS        V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.755e-28
Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 2
Query:  200 MASKRILKELKDLQKDPPTS---CSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 637
            +A +RI +E K++ K   TS        V E+    +  I GP D+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.993e-28
Identity = 59/148 (39.86%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  206 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 637
            + R+ +EL  L  +PP   +     + M   +A I+G +++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:    4 TSRLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.909e-28
Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  212 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 640
            RI+KE + L  +P     A P   +  ++   I G S DSP+ GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +K+++A+   TAR+WT+ YAM
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.105e-28
Identity = 60/148 (40.54%), Postives = 93/148 (62.84%), Query Frame = 2
Query:  206 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 637
            + R+ +EL  L  +PP   +     + M   +A I+G +++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:    4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.105e-28
Identity = 55/134 (41.04%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  203 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 604
            A +R++++ K L  D P   S  P  +++  W A I GP ++P+  G F +T+ F   YP KPP V F +K+FHPNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE
Sbjct:    5 AKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYE 138          
BLAST of CK937078 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.708e-28
Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 2
Query:  206 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS--------DKAKYESTAR 616
            SKR+  EL +L   P    SA P  +++F+W  TI G  D+ Y    F +++ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +  +L+SI SLL +PN + PL    A ++ +        DK   E+T+R
Sbjct:    8 SKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
The following BLAST results are available for this feature:
BLAST of CK937078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC27_ARATH3.198e-3046.53Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC2_KLULA4.176e-3039.31Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBE2K_MOUSE1.755e-2844.00Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.755e-2844.00Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.755e-2844.00Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBE2T_BOVIN2.993e-2839.86Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UE2NL_HUMAN3.909e-2844.44Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBE2T_HUMAN5.105e-2840.54Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC2_CRYNE5.105e-2841.04Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBE2C_DICDI8.708e-2842.07Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004514_D12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937078 ID=CK937078; Name=CK937078; organism=Citrus sinensis; type=EST; length=759bp
GGGGGACGATATTTGTGTTGAAGAACAACGAAGCAAGGGGTTGATAGAGG
AGCGAGGCGGGGGCGGCTTGACGGCCTAGATCTGCTTCACCGTTTCGCTT
TCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCGCAAGTTTCGCA
GGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAGTCA
TGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGATCCT
CCCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTGGCA
AGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTATTTT
TAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAGGTT
GCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAGCAT
CTGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTTCAA
AGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGACGAC
CCTCTTGTACCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCAAATA
TGAATCCACGGCCAGGAGCTGGACACAGAAGTATGCCATGGGATGAAGGT
TGTTAGGATATTGCAGAAAAAGGAACACATTTATTGAAATATGTTGTGTG
TGTTGTCTATCTATTTTCTTTAACTTGCTTTGGGGAGGGCAGACGTTGGT
GTTTTAGAA
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