FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:31..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: ERF3_CANAL (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida albicans GN=SUP35 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.192e-14
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            K H++I+ +GHVD+GKST  G+++Y  G +DKR +E++E+EA +  ++ +  +WV++  K ER  G TI++    FET
Sbjct:  290 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEERNDGKTIEVGKAYFET 367          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 7.111e-14
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            K H++I+ +GHVD+GKST  G+++Y  G +DKR ++++E+EA +  ++ +  +WV++  K ER  G TI++    FET
Sbjct:  276 KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVDKYEREAKDAGRQGWYLSWVMDTNKEERSDGKTIEVGKAYFET 353          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.213e-13
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            K H++I+ +GHVD+GKST  G+L++  G +DKR +E++E+EA +  ++ +  +W+++  K ER  G TI++    FET
Sbjct:  316 KDHMSIIFMGHVDAGKSTMGGNLLFLTGAVDKRTVEKYEREAKDAGRQGWYLSWIMDTNKEERNDGKTIEVGKSYFET 393          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.529e-13
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEKTH+N+  IGHVD GKST  GHL+   G I ++ ++  E           K+ +V++KL  ERERG+TID+A  KFET
Sbjct:    1 MAKEKTHMNLAFIGHVDHGKSTLVGHLLLLEGAIAEQQLDEGED----------KFRFVMDKLGEERERGVTIDLAHAKFET 72          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.341e-12
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK H+N+  IGHVD GKST  GHL+ + G I ++ +   E           K+ +V+++L  ERERG+TID+A  KFET
Sbjct:    1 MAKEKEHMNLAFIGHVDHGKSTLVGHLLLQAGAIAEQQLAEGED----------KFRFVMDRLSEERERGVTIDLAHAKFET 72          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.341e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M K K HIN+  IGHVD GKST  GHL+ K G I ++ ++  E           K+ +V++KL  ERERG+TID+A  KF T
Sbjct:    1 MAKTKEHINLAFIGHVDHGKSTLVGHLLLKAGAIAEQQLDDGEN----------KFRFVMDKLGEERERGVTIDLAHQKFST 72          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.096e-12
Identity = 29/79 (36.71%), Postives = 53/79 (67.09%), Query Frame = 2
Query:   83 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            + H+NIV +GHVD+GKST +G ++   G +D   + ++E+EA E ++  + YA++++  + ER +G T+++    FETT
Sbjct:  115 REHLNIVFLGHVDAGKSTLSGSIMVLTGQVDPHTLAKYEREAKENHREGWIYAYIMDTNEEERTKGKTVEVGRAHFETT 193          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.096e-12
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M KEK HIN+  IGHVD GKST  G L+Y  G I+ +          ++ +   K+  +++ L+ ERERG+TID+A  KFET
Sbjct:    1 MAKEKEHINLAFIGHVDHGKSTLVGRLLYDTGVIEDK----------DLGEGEDKFRVIMDTLEEERERGVTIDLAHTKFET 72          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
ERF3_CANAL3.192e-1441.03Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA7.111e-1439.74Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI1.213e-1339.74Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_METST3.529e-1347.56Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_METTH1.341e-1245.12Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_METS31.341e-1246.34Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
ERF3_DICDI5.096e-1236.71Eukaryotic peptide chain release factor GTP-bindin... [more]
EF1A_METKA5.096e-1243.90Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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