FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:31..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
[Close]
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.061e-38
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2 
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET+
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETS 83
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A3_HUMAN7.061e-3890.36Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A1_RAT7.061e-3890.36Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT7.061e-3890.36Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB7.061e-3890.36Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]
EF1A1_PANTR7.061e-3890.36Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE7.061e-3890.36Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN7.061e-3890.36Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]
EF1A1_HORSE7.061e-3890.36Elongation factor 1-alpha 1 OS=Equus caballus GN=E... [more]
EF1A1_FELCA7.061e-3890.36Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR7.061e-3890.36Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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