FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:31..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.573e-37
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEKTH+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.573e-37
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEKTH+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A2_OSCTI (Elongation factor 1-alpha 2 OS=Oscheius tipulae GN=eft-2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.573e-37
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_OSCTI (Elongation factor 1-alpha 1 OS=Oscheius tipulae GN=eft-1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.573e-37
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.683e-37
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEKTHIN+VVIGHVDSGKSTTTGHLIYKLGGIDKR IE+FEKE++EM K SFKYAWVL+KLKAERERGITIDIALW+FET
Sbjct:    1 MGKEKTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESSEMGKGSFKYAWVLDKLKAERERGITIDIALWQFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.683e-37
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEKTH+N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE FEKEAAE+ K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKTHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEEFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.505e-37
Identity = 73/82 (89.02%), Postives = 78/82 (95.12%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK+HIN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.577e-37
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HINIVVIGHVDSGKSTTT H+IYKLGGIDKRVIERFEKEA EMNKRSFKYAW+L+KLKAERERGITIDIAL KFETT
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTVHVIYKLGGIDKRVIERFEKEADEMNKRSFKYAWLLDKLKAERERGITIDIALLKFETT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ORYLA (Elongation factor 1-alpha OS=Oryzias latipes GN=eef1a PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.577e-37
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKEK HINIVVIGHVDSGKST+TGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDIALWKFET+
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTSTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A3_XENLA (Elongation factor 1-alpha, oocyte form OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.577e-37
Identity = 74/82 (90.24%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVL+KLKAERERGITIDI+LWKFET
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFET 82          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A3_RHIRA1.573e-3789.02Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A2_RHIRA1.573e-3789.02Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A2_OSCTI1.573e-3791.46Elongation factor 1-alpha 2 OS=Oscheius tipulae GN... [more]
EF1A1_OSCTI1.573e-3791.46Elongation factor 1-alpha 1 OS=Oscheius tipulae GN... [more]
EF1A_CRYPV2.683e-3789.02Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A1_RHIRA2.683e-3789.02Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_YEAST3.505e-3789.02Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_PEA4.577e-3791.57Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_ORYLA4.577e-3789.16Elongation factor 1-alpha OS=Oryzias latipes GN=ee... [more]
EF1A3_XENLA4.577e-3790.24Elongation factor 1-alpha, oocyte form OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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