FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:31..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 9.544e-35
Identity = 67/82 (81.71%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK H+N+VV+GHVD+GKST TGHLIYK GGIDKR IE+FEKEAA++ K SFKYAWVL+KLKAERERGITIDIALWKFE+
Sbjct:    1 MGKEKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAADIGKASFKYAWVLDKLKAERERGITIDIALWKFES 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.246e-34
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 2
Query:   71 MGKE-KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            MGKE K HINIVVIGHVDSGKSTTTGHLIYK GGID+R IE+FEKEAAE+ K SFKYAWVL+KLK+ERERGITIDIALWKF+T+
Sbjct:    1 MGKEDKQHINIVVIGHVDSGKSTTTGHLIYKCGGIDQRTIEKFEKEAAELGKGSFKYAWVLDKLKSERERGITIDIALWKFQTS 84          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.246e-34
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEKTHIN+VVIGHVD+GKSTTTGHLIYKLGGID R I +FE +A EM K SFKYAWVL+KLKAERERGITIDIALWKF T
Sbjct:    1 MGKEKTHINLVVIGHVDAGKSTTTGHLIYKLGGIDARTIAKFEADAKEMGKSSFKYAWVLDKLKAERERGITIDIALWKFST 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.126e-34
Identity = 70/81 (86.42%), Postives = 74/81 (91.36%), Query Frame = 2
Query:   77 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFETT 319
            K K HINIVVIGHVDSGKST+TGH+IYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFETT
Sbjct:    4 KVKPHINIVVIGHVDSGKSTSTGHMIYKCGGIDKRQIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETT 84          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.777e-34
Identity = 68/79 (86.08%), Postives = 74/79 (93.67%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +K HIN+VVIGHVDSGKSTTTGHLIYK GGIDKRVIE+FEKE+AE  K SFKYAWVL+KLKAERERGITIDI+LWKFET
Sbjct:    5 DKVHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEQGKGSFKYAWVLDKLKAERERGITIDISLWKFET 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_BLAHO (Elongation factor 1-alpha OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.753e-31
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            MGKEK HIN+VVIGHV +GKSTTTGHLIY  GGIDKR IERFE+    + K SFKYAWVL K+KAERERGITIDI+LWKFET
Sbjct:    1 MGKEKPHINLVVIGHVVAGKSTTTGHLIYACGGIDKRTIERFEEGGQRIGKGSFKYAWVLAKMKAERERGITIDISLWKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A1_XENLA (Elongation factor 1-alpha OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 4.149e-30
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 2
Query:   80 EKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            +KTH+NIV+IGHVDSGKSTTTGHLIYK GG D R +E+ E  AA++ K SFK+AW+L+KLKAERERGITIDI+LWKF+T
Sbjct:    7 QKTHLNIVIIGHVDSGKSTTTGHLIYKCGGFDPRALEKVEAAAAQLGKSSFKFAWILDKLKAERERGITIDISLWKFQT 85          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_SPOFR (Elongation factor 1-alpha (Fragment) OS=Spodoptera frugiperda PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_HELZE (Elongation factor 1-alpha (Fragment) OS=Heliothis zea PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_HELVI (Elongation factor 1-alpha (Fragment) OS=Heliothis virescens PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_TRYBB9.544e-3581.71Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_ASPOR1.246e-3484.52Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1AS_PORPU1.246e-3484.15Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_HYDAT2.126e-3486.42Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]
EF1A_TETPY2.777e-3486.08Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_BLAHO3.753e-3178.05Elongation factor 1-alpha OS=Blastocystis hominis ... [more]
EF1A1_XENLA4.149e-3073.42Elongation factor 1-alpha OS=Xenopus laevis PE=1 S... [more]
EF1A_SPOFR2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Spodoptera... [more]
EF1A_HELZE2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]
EF1A_HELVI2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Heliothis ... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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