FC921768

Overview
NameFC921768
Unique NameFC921768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:31..351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_HELGL (Elongation factor 1-alpha (Fragment) OS=Helicoverpa gelotopoeon PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_HELDI (Elongation factor 1-alpha (Fragment) OS=Heliocheilus discalis PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_HELAM (Elongation factor 1-alpha (Fragment) OS=Helicoverpa armigera PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_HELAL (Elongation factor 1-alpha (Fragment) OS=Heliocheilus albipunctella PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ANIIF (Elongation factor 1-alpha (Fragment) OS=Anicla infecta PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_ADIBE (Elongation factor 1-alpha (Fragment) OS=Adisura bella PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.690e-29
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2
Query:  113 HVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            HVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL+KLKAERERGITIDIALWKFET
Sbjct:    1 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 68          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A2_EUPCR (Elongation factor 1-alpha 2 OS=Euplotes crassus GN=EFA2 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.517e-27
Identity = 57/80 (71.25%), Postives = 71/80 (88.75%), Query Frame = 2
Query:   77 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            KEK H+N+VVIGHVDSGKSTTTGHLIYKLGGID+R + + E++A E+NK SFKYA+VL+ LKAE+ERGITI+ AL +F+T
Sbjct:    4 KEKDHLNLVVIGHVDSGKSTTTGHLIYKLGGIDERTLAKLEEKALELNKASFKYAFVLDNLKAEQERGITINCALRQFDT 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.402e-24
Identity = 48/80 (60.00%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   77 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            KEK H+N++VIGHVD GKST  GHL+Y+LG +D++ ++  E+EA +  K SFKYAW+L+KLK ERERG+TID+   KFET
Sbjct:    4 KEKPHMNLIVIGHVDHGKSTLVGHLLYELGFVDEKTLKMLEEEAKKRGKESFKYAWLLDKLKEERERGVTIDLTFMKFET 83          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.402e-24
Identity = 49/82 (59.76%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M ++K HIN+VVIGHVD GKST  GHL+Y+LG +D++ I+  E+EA +  K SFKYAW+L++LK ERERG+TID+   KFET
Sbjct:    1 MSQQKPHINLVVIGHVDHGKSTLVGHLLYRLGFVDEKTIKMLEEEAKKKGKESFKYAWLLDRLKEERERGVTIDLTFVKFET 82          
BLAST of FC921768 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.443e-24
Identity = 46/82 (56.10%), Postives = 68/82 (82.93%), Query Frame = 2
Query:   71 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLNKLKAERERGITIDIALWKFET 316
            M ++K H+N+VVIGH+D GKST  G L+Y++G +D R+I+++E+EA +M + ++KYAWVL+KLK ERE+GITID+  +KFET
Sbjct:    1 MSEKKPHLNLVVIGHIDHGKSTLMGRLLYEIGAVDPRLIQQYEEEAKKMGRETWKYAWVLDKLKEEREKGITIDLGFYKFET 82          
The following BLAST results are available for this feature:
BLAST of FC921768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_HELGL2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELDI2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_HELAM2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Helicoverp... [more]
EF1A_HELAL2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Heliocheil... [more]
EF1A_ANIIF2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Anicla inf... [more]
EF1A_ADIBE2.690e-2989.71Elongation factor 1-alpha (Fragment) OS=Adisura be... [more]
EF1A2_EUPCR2.517e-2771.25Elongation factor 1-alpha 2 OS=Euplotes crassus GN... [more]
EF1A_IGNH43.402e-2460.00Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_HYPBU3.402e-2459.76Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_THEPD4.443e-2456.10Elongation factor 1-alpha OS=Thermofilum pendens (... [more]

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Properties
Property NameValue
Genbank descriptionC06052B04T7 RindPdigS Citrus sinensis cDNA clone C06052B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921768 ID=FC921768; Name=FC921768; organism=Citrus sinensis; type=EST; length=321bp
CGCGGGGGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTTTAATAAG
GTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACATT
GTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTT
GATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGA
AGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCTC
AACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTT
GTGGAAGTTCGAGACCACCAT
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