CK937025

Overview
NameCK937025
Unique NameCK937025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937025 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.865e-35
Identity = 80/193 (41.45%), Postives = 116/193 (60.10%), Query Frame = 3
Query:  174 PATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRD--ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR--VYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPF 734
            P  F E     + + +L +    R+++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+D  ELD EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+ ++H Y+ILW    I+F+VDDVPIR  + K      +P  +PM +Y+T+W+A  WAT GG   +D++ +PF
Sbjct:   37 PIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYP-QKPMSLYATIWDASSWATSGGKFGVDYTFSPF 228          
BLAST of CK937025 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.209e-28
Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  180 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPM 650
            T+  ++  TW    L  I     +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G ++QR  LWFDP  DYH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M
Sbjct:   23 TWGNNYYQTWGHQAL-VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTM 176          
BLAST of CK937025 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 65/199 (32.66%), Postives = 90/199 (45.23%), Query Frame = 3
Query:  186 LEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIR-VYKNSGRAPFPM-----NQPMGVYSTLWEAD---------DWATRGGLEKIDWSKAP 731
            LEDF  T S     +   G  +  +  + +G    S R +L+G+ S+++K     S G VTAF +   T  + DE+DFE+LG   G   T Q+N Y+ G  D  R QR  +  D  A YH Y I W+   I++YVD    R V K     P          PM +   +W            +WA  GGL  IDW  +P
Sbjct:  148 LEDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTAR--SRGVVTAFDL---TSAIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVDGKIARTVLKKDTWDPISKEYRYPQTPMRLEIAVWPGGSETNGPGTINWA--GGL--IDWENSP 334          
BLAST of CK937025 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 54/177 (30.51%), Postives = 78/177 (44.07%), Query Frame = 3
Query:  195 FKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKR-----QYLFGRVSMKIKLVPGDSAGTVTAF--YMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWE---ADDWATR 695
            F   W  + +     G+ I L LD+  G  +  K      +  FG    ++++    + G V++F  Y   +  N  DE+D EFLG  T +   VQ N Y NG G  E   NL FD + D+H Y   W   +I FYVD    +VY+ +   P     P  +   LW     D+W  R
Sbjct:   60 FNCVWKPSQVT-FSNGKMI-LTLDREYGGSYPYKSGEYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGKDTTK---VQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGK--KVYRGTRNIPV---TPGKIMMNLWPGIGVDEWLGR 226          
The following BLAST results are available for this feature:
BLAST of CK937025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
XTH29_ARATH1.865e-3541.45Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH2.209e-2842.68Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRR1_YEAST5.839e-1332.66Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]
GUB_CLOTH4.185e-1130.51Beta-glucanase OS=Clostridium thermocellum (strain... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_C06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937025 ID=CK937025; Name=CK937025; organism=Citrus sinensis; type=EST; length=745bp
GGGGACACTCGGNNNACATAACCACAACATATAATTAAAGTTCTCTTTCT
AATTAGTAACAGATAATATTTTATTGTACGGCTTGTTTTACAGCTATGGC
TATCCTAAGAAATGCAATAGCATTATTTGTGTTGCTTTACTGTCTTGTAT
CCTGCTCTTGCGTTTTAGGGCGACCGGCTACTTTTCTTGAGGATTTTAAA
GTCACATGGTCCGATGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCAT
CCAGCTAGTTCTAGACCAAAATTCAGGATGTGGGTTTGCTTCCAAAAGGC
AGTACTTGTTCGGGCGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGAC
TCTGCTGGAACTGTCACTGCATTTTATATGAATTCCAACACCGAAAATGT
GAGAGACGAGCTTGATTTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTT
ACACGGTCCAGACCAATATCTATGCAAATGGAAAAGGCGATAGAGAACAG
AGAGTGAACCTCTGGTTTGACCCTGCTGCAGATTATCACCTTTACACTAT
TCTCTGGAACCATCACCATATTGTCTTCTATGTGGATGATGTGCCCATCA
GGGTTTACAAAAACAGTGGAAGGGCTCCATTTCCAATGAACCAACCCATG
GGGGTGTATTCGACGCTGTGGGAAGCAGATGACTGGGCAACAAGAGGTGG
TCTAGAGAAAATAGATTGGAGCAAAGCTCCTTTTTATGCTTATTA
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