CK936995

Overview
NameCK936995
Unique NameCK936995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.587e-29
Identity = 73/194 (37.63%), Postives = 108/194 (55.67%), Query Frame = 2
Query:  179 SPAFNLTTISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPS-KPMSLYTTIWDASNWAISGGKAKVN 757
            S A  +++  F++ +   +   ++  S DG++  L L++ SG+ F S + +  G     IKL    + G  VA+Y S+        DE+DFEFLGNV G+P+  QTN Y  G     REER  LWFDP K FH YSILW  + I+F VD++PIR        G  +P  +PMS+  ++W+  +WA  GG  K++
Sbjct:   27 SQASVVSSGDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQ---PNRDEIDFEFLGNVNGQPYILQTNVYAEGLD--NREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKID 215          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.945e-23
Identity = 56/146 (38.36%), Postives = 84/146 (57.53%), Query Frame = 2
Query:  203 ISFDEGYSHLFGDGNLIRSPDGKNVRLLLNRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIR 640
            +++   Y   +G   L+ +   + ++L L++ SGSGF S  +Y  G+F+  IK P   + G+  +FY  +       HDEL F+ LG   G P+   TN Y  G    G+++R+RLWFDPTK +H YS LW  N ++FYVD+ PIR
Sbjct:   22 VTWGNNYYQTWGHQALVINKTSE-LQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRS---SRHDELCFQILGK-NGPPYLLNTNMYLYGEG--GKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIR 160          
BLAST of CK936995 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 58/189 (30.69%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  188 FNLTTISFDEGYSH------LFGDGNLIRSPDGKNVRLLL-----NRFSGSGFVSSKLYNHGFFSAMIKLPSDHTAGLCVAFYTSNGDVFPKTHDELDFEFLGNVAGKPWRFQTNFYGNGSTARGREERYRLWFDPTKQFHRYSILWTSNNIIFYVDEVPIREVVRSTAMGGDFPSKPMSLYTTIWDAS 721
            FN +T    +GYS+       +   N+  + DGK ++L L     N+F  + + S+ +Y +G +   +K P+ +T G+  +F+T  G       DE+D EFLG    K    Q N+Y NG    G E+   L FD +K FH Y+  W    I +YVD      V++ TA   + PS P  +   +W+ +
Sbjct:   36 FNRSTWEKADGYSNGGVFNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK-PAKNT-GIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG--VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVD-----GVLKHTAT-ANIPSTPGKIMMNLWNGT 210          
The following BLAST results are available for this feature:
BLAST of CK936995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH10_ARATH1.587e-2937.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH4.945e-2338.36Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_PAEMA2.545e-1130.69Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004515_E11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936995 ID=CK936995; Name=CK936995; organism=Citrus sinensis; type=EST; length=757bp
GGGGAGAAACCAACACACAGCGTAACAAATTTTTATTTATAGAAACCAAA
AAATAATTATGGATTGGTTTCTTTGCTCTCAATCAAAAAAATCATCAGCA
CCCTTCACTCTAATTCTAATTCTGTTGTGTTGCTGCTCATCACCATCACT
TGTGTTCACATTCGCAAACGCATCATCATCACCTGCTTTCAACCTCACCA
CCATCTCTTTCGATGAAGGCTACTCTCATCTCTTCGGCGACGGCAATCTC
ATTCGCTCCCCCGACGGCAAGAACGTTCGTCTCCTCCTCAACCGCTTCTC
CGGGTCCGGTTTTGTTTCGTCAAAATTGTACAATCACGGGTTCTTTAGCG
CGATGATCAAGTTGCCATCGGATCACACGGCTGGCTTATGTGTTGCATTC
TATACATCAAATGGAGACGTGTTCCCAAAAACACACGACGAATTAGACTT
TGAGTTTCTAGGAAACGTGGCTGGAAAACCGTGGAGGTTCCAAACAAATT
TCTATGGAAATGGGAGCACGGCACGCGGCAGGGAAGAGAGATACCGGCTT
TGGTTTGATCCCACGAAGCAATTTCATAGATATAGCATTCTTTGGACAAG
CAACAACATTATATTCTATGTGGATGAAGTACCAATAAGGGAAGTCGTGC
GCTCAACGGCAATGGGTGGAGATTTCCCATCAAAGCCAATGTCATTGTAC
ACAACAATTTGGGATGCCTCAAATTGGGCCATATCAGGTGGCAAAGCCAA
AGTTAAT
back to top