CK936986

Overview
NameCK936986
Unique NameCK936986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.635e-22
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            C+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:   43 CLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.442e-22
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 411
            CI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:   41 CISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.584e-22
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI ++R+GG  PP  CCNG++++NG A+TTPDRQAACNCLK    S+ G+N   A  LP +CGV++PYKIS +T+C+ V+
Sbjct:   37 CINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          

HSP 2 Score: 22.3274 bits (46), Expect = 3.584e-22
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  129 VTNAITCGQVTGSLA 173
            V +AITC QV+ +LA
Sbjct:   21 VAHAITCSQVSANLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.664e-22
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   37 CLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          

HSP 2 Score: 26.5646 bits (57), Expect = 4.664e-22
Identity = 11/16 (68.75%), Postives = 12/16 (75.00%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLA 173
            P   AITCGQVT +LA
Sbjct:   20 PCAEAITCGQVTSNLA 35          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.012e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  175 CIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   40 CINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          

HSP 2 Score: 21.1718 bits (43), Expect = 6.012e-22
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  138 AITCGQVTGSLA 173
            A+T GQVT SLA
Sbjct:   27 AVTSGQVTNSLA 38          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.069e-22
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  175 CIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            CI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   36 CINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          

HSP 2 Score: 21.1718 bits (43), Expect = 6.069e-22
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  138 AITCGQVTGSLA 173
            A+T GQVT SLA
Sbjct:   23 AVTSGQVTNSLA 34          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.446e-21
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   38 CLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          

HSP 2 Score: 21.1718 bits (43), Expect = 8.446e-21
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  138 AITCGQVTGSLA 173
            AI+CG VTG L+
Sbjct:   25 AISCGAVTGDLS 36          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   31 CLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-20
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   39 CLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CK936986 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.107e-20
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query:  175 CIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 414
            C+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct:   39 CLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of CK936986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP2_SORBI2.635e-2262.03Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_MAIZE3.442e-2262.03Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP_PYRCO3.584e-2255.00Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_TOBAC4.664e-2260.00Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP2_GOSHI6.012e-2259.26Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI6.069e-2259.26Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP5_LENCU8.446e-2158.75Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP4_LENCU8.478e-2160.00Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU1.107e-2060.00Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU1.107e-2060.00Non-specific lipid-transfer protein 2 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004515_F08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936986 ID=CK936986; Name=CK936986; organism=Citrus sinensis; type=EST; length=680bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTATGCATCGCTTTCTTGAGAACTGGAGG
GCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAA
GCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCC
TCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACT
GCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGT
ATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTTTG
AGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAATTCTCCCTTA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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