FC921765

Overview
NameFC921765
Unique NameFC921765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length221
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1574 contig Csv1_Contig1574:1482..1702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921765 vs. ExPASy Swiss-Prot
Match: AROF_STRLI (Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragment) OS=Streptomyces lividans PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.101e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    8 EMTGPNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 160
            E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:   94 ELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 144          
BLAST of FC921765 vs. ExPASy Swiss-Prot
Match: AROF_STRCO (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Streptomyces coelicolor GN=aroH PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.101e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 2
Query:    8 EMTGPNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLR 160
            E+TG +VTEC+GG   +  DDL  RY T CDPRLN SQSL+LAF++AE  R
Sbjct:  398 ELTGDDVTECVGGGDEIFVDDLHQRYETACDPRLNRSQSLDLAFLVAEMYR 448          
BLAST of FC921765 vs. ExPASy Swiss-Prot
Match: AROF_NEUCR (Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neurospora crassa GN=aro-8 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.621e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 2
Query:    8 EMTGPNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 169
            E+TG  VTEC+GG   +  DDLS+ Y + CDPRLN  Q+LELAF++A+  R+ R
Sbjct:  415 ELTGDAVTECLGGGAGLDEDDLSTNYTSFCDPRLNEKQALELAFLVADHYRQER 468          
The following BLAST results are available for this feature:
BLAST of FC921765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AROF_STRLI5.101e-1260.78Phospho-2-dehydro-3-deoxyheptonate aldolase (Fragm... [more]
AROF_STRCO5.101e-1260.78Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Str... [more]
AROF_NEUCR9.621e-1153.70Phospho-2-dehydro-3-deoxyheptonate aldolase OS=Neu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06052B01T7 RindPdigS Citrus sinensis cDNA clone C06052B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921765 ID=FC921765; Name=FC921765; organism=Citrus sinensis; type=EST; length=221bp
CATTTGCGAGATGACAGGCCCGAATGTGACAGAGTGCATCGGTGGGTCCA
GAACAGTGACCTTCGACGACTTGAGTTCACGCTACCACACCCACTGTGAC
CCTAGGCTCAATGCTTCACAGTCCCTTGAGCTTGCCTTCATCATTGCCGA
GCGCCTCAGAAAGAGGAGGATTAGCTCACAGCAACCTCTTGCCTCTTCTT
CTCTCCTGTAGAATGGCCCGA
back to top