CX675215

Overview
NameCX675215
Unique NameCX675215
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.724e-15
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = -3
Query:  390 LNAFHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 671
            L A H GWG ++++GV        T P  L+  R  +G  FG  K RS LP +V++Y++ +LE++K+ITH  P  EIN+AF  M  G  I+ ++
Sbjct:  284 LEACHKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTVL 377          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.724e-15
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = -3
Query:  381 GWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 653
            G G  V++G+            +LL  R + G+ FG  KP+ D+P +V+ Y+ KEL ++ FITH + F EINKAFDL++ G+S+RCI+ M+
Sbjct:  298 GSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLLVQGKSLRCILWMN 388          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.724e-15
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  390 GWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 653
            GWG  V+VGV   + +    PM L+  R +K TFFG +K    +P +V  YM K+ +++  ++HT+P  +IN AFDLM AG+S R I+
Sbjct:  290 GWGTCVIVGVAVGEQSIPFSPMQLIMGRKIKATFFGGWKSVKSVPKLVSDYMAKKFDLDALVSHTLPLDKINDAFDLMNAGKSNRTIL 377          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.488e-14
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  390 GWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 653
            GWG    +GV          P  L+  RT+ GTFFG +K    +P +V  Y NK+  ++  +THT+PF +I++AFDLM  G+SIR I+
Sbjct:  291 GWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTIL 378          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.488e-14
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  390 HDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 659
            H   G +V+VGVP    +   +PM LL+ RT KG  FG +K +  +P +V  +M K+  ++  IT+ +PF +IN+ FDL+ +G+SIR I+
Sbjct:  284 HGACGTSVIVGVPPDSQSLTVNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFSLDPLITNVLPFEKINEGFDLLRSGKSIRTIL 373          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.488e-14
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  390 HDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 659
            H+  G +V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  ++  ITH +PF +IN+ FDL+ +G+SIR ++
Sbjct:  284 HEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.488e-14
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  390 HDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 659
            H+  G +V+VGVP        +PM LL  RT KG  +G +K +  +P +V  +M K+  ++  ITH +PF +IN+ FDL+ +G+SIR ++
Sbjct:  284 HEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVL 373          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.315e-14
Identity = 35/90 (38.89%), Postives = 55/90 (61.11%), Query Frame = -3
Query:  390 HDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 659
            H   G +V+VGVP        +P+ L   RT KG  FG +K +  +P +V  +M K+  ++  ITHT+PF +IN+ FDL+ +G+SIR ++
Sbjct:  284 HQNLGTSVVVGVPPNASMITYNPLMLFTGRTWKGCVFGGWKSKDSVPKLVSDFMQKKFVLDPLITHTLPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.315e-14
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  390 HDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 659
            H+  G +V+VGVP        +PM LL  RT KG  FG +K +  +P +V  +M K+  ++  IT+ +PF +IN+ FDL+ +G+SIR ++
Sbjct:  284 HEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNILPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of CX675215 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 4.329e-14
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = -3
Query:  390 HDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 659
            H+  G +V+VGVP        +P+ LL  RT KG  FG +K +  +P +V  +M K+  ++  IT+ +PF +IN+ FDL+ +G+SIR I+
Sbjct:  284 HEACGTSVIVGVPPDSQNLSINPVLLLTGRTWKGAIFGGFKSKESVPKLVSDFMAKKFSLDALITNVLPFEKINEGFDLLRSGKSIRTIL 373          
The following BLAST results are available for this feature:
BLAST of CX675215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
FADH2_SCHPO8.724e-1539.36Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHL5_ARATH8.724e-1541.76Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia... [more]
ADH4_STRCA8.724e-1542.05Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH4_HUMAN1.488e-1440.91Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1_RABIT1.488e-1440.00Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ADH1B_PANTR1.488e-1438.89Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN1.488e-1438.89Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1_NAJNA3.315e-1438.89Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
ADH1G_HUMAN3.315e-1438.89Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1G_PAPHA4.329e-1438.89Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60F03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60F03-K6-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675215 ID=CX675215; Name=CX675215; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTGAAGCCGACAAAAGCGACTGGCGTAATTACCAT
ATCATTAACACTGCAACGGCGTATAAGAAAGAAGATTTACACGAAAATCT
TTATTACATAAGCTACAAAAAGAAGTACTGTAAGAAATAGGTAGAAAACA
CACCTCTTTGTACGCCATATGCAGCAAGTCATCAAACAGAAAAACAAAAC
AAAAAAAGGGACTGTAAGAAATATGTAGAAAACACAACTCTTTGAAAGCC
ATTCGCAGCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGT
AATATATAACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAG
ATTGATCAGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACC
TAATGCTTTCTCCCGCAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAG
AAGGGCACAGTGTGAGTGATGAATTTCTCGACCTCCAACTCCTTGTTCAT
GTATTTTTCAACAACAGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAA
AGAAGGTACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTC
TTGAATGCATCATCTTTGTTTGGCACACCCACAAGCACAGCAACACCCCA
ACCATCGTGAAACGCATTCAAATGCTGAAATCATGGCCTGGACGCTTCCA
GTACATTCAACACTTCTATCCACTCCACCATTGGTCATGTCAGCAATCAC
CTGTTGAACAGGTTTGTCATAATCTTTT
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