CK936893

Overview
NameCK936893
Unique NameCK936893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.153e-47
Identity = 92/148 (62.16%), Postives = 116/148 (78.38%), Query Frame = 2
Query:  101 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++ EL  ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPAL 148          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.275e-46
Identity = 86/144 (59.72%), Postives = 113/144 (78.47%), Query Frame = 2
Query:  113 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            F+ +FS    KK+ RILM+GLD AGK+T+L+KLKLG++V TIPTIGFNVET+ YKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LV ANKQD+ NAMN AEI + L L+S+
Sbjct:   13 FSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSI 156          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.275e-46
Identity = 95/148 (64.19%), Postives = 114/148 (77.03%), Query Frame = 2
Query:  101 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            MGL F+K+ S +F   E R LM+GLD AGKTTILYKLKL E V TIPTIGFNVETV ++ I+ TVWDVGGQ KIR LW++YF NT  L+FVVDS+D +RI EA++EL  +L E EL D+ LLVFANKQD+PNA + AE+T  L L SL
Sbjct:    1 MGLFFSKISSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSL 148          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 6.327e-46
Identity = 86/145 (59.31%), Postives = 114/145 (78.62%), Query Frame = 2
Query:  101 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 535
            MG + +K+  +LF  KEM+ILM+GLD AGKTTILYKLKL +I T+ PT+GFNVETV YKN+ F +WDVGGQ ++RPLWRHYF  T  LIFV+DS+ R+R+ EA++EL+ ++ E E+ + VLLV+ANKQDL +AM   E++D L L
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLEL 145          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.327e-46
Identity = 85/134 (63.43%), Postives = 108/134 (80.60%), Query Frame = 2
Query:  143 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKL 535          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.327e-46
Identity = 85/134 (63.43%), Postives = 108/134 (80.60%), Query Frame = 2
Query:  143 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKL 535          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 182.57 bits (462), Expect = 1.079e-45
Identity = 88/149 (59.06%), Postives = 116/149 (77.85%), Query Frame = 2
Query:  101 MGLTFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            MG  F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH ML E+EL+DA LLVFANKQD P A++A+E++ +L L  L
Sbjct:    1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL 149          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.404e-45
Identity = 89/148 (60.14%), Postives = 116/148 (78.38%), Query Frame = 2
Query:  107 LTFTKLFSRLFA--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            +TFTK  +R++   K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVG + K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L
Sbjct:  369 VTFTK-DNRVYIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKL 515          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 5.922e-44
Identity = 86/140 (61.43%), Postives = 105/140 (75.00%), Query Frame = 2
Query:  125 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            F  LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE VEYKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  +R EL  ML EDEL+ AVL V ANKQD+   +   E+   LGL +L
Sbjct:    8 FRGLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDAL 147          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 175.252 bits (443), Expect = 1.723e-43
Identity = 85/140 (60.71%), Postives = 105/140 (75.00%), Query Frame = 2
Query:  125 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            F  L   +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE V YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRI  ++DEL  ML E+EL  A+L+V ANKQD+   M  AE+   LGL +L
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDELLYMLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENL 147          
The following BLAST results are available for this feature:
BLAST of CK936893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL1_MOUSE1.153e-4762.16ADP-ribosylation factor-like protein 1 OS=Mus musc... [more]
ARFK_DICDI1.275e-4659.72ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARF11_CAEEL1.275e-4664.19ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARF3_YEAST6.327e-4659.31ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARD1_MOUSE6.327e-4663.43GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN6.327e-4663.43GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARL1_YEAST1.079e-4559.06ADP-ribosylation factor-like protein 1 OS=Saccharo... [more]
ARD1_RAT2.404e-4560.14GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARL1_CAEEL5.922e-4461.43ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARL1_DROME1.723e-4360.71ADP-ribosylation factor-like protein 1 OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004516_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936893 ID=CK936893; Name=CK936893; organism=Citrus sinensis; type=EST; length=544bp
AGGGGGTTGTTGTTAAGCTAATAAGCTTCGTCCTCCACACCCCCCCCCCC
TCCCCTCTCTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGA
ATGGGGCTGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGA
GATGCGAATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCT
TGTACAAGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGG
TTTAATGTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGA
TGTTGGTGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGA
ACACTCAAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATT
GTAGAAGCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCG
AGATGCAGTGTTGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAA
TGAATGCTGCTGAGATTACTGATAAGCTTGGCCTCCACTCCCTC
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