CK936893

Overview
NameCK936893
Unique NameCK936893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL4C_MOUSE (ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.025e-35
Identity = 74/144 (51.39%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  128 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            S + A + + I+M+GLD+AGKTT+LY+LK  E V T+PTIGFN E ++  N     IS   WDVGGQ+K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L
Sbjct:    6 SNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHEL 149          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.025e-35
Identity = 74/144 (51.39%), Postives = 99/144 (68.75%), Query Frame = 2
Query:  128 SRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN-----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            S + A + + I+M+GLD+AGKTT+LY+LK  E V T+PTIGFN E ++  N     IS   WDVGGQ+K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L
Sbjct:    6 SNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHEL 149          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.111e-33
Identity = 67/134 (50.00%), Postives = 96/134 (71.64%), Query Frame = 2
Query:  143 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLLIFANKQDLPGALSSNAIREALELDSI 147          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.111e-33
Identity = 63/126 (50.00%), Postives = 97/126 (76.98%), Query Frame = 2
Query:  146 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIT 520
            K+ ++L++GLD+AGK+T+LYKLKL + +TTIPTIGFNVE +E  +N S TVWDVGGQ+K+R +W  Y +NT GL++VVDS D+ R+ E++ +   +L  + +++  +++ ANKQD+P A+ A +IT
Sbjct:   12 KQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNFSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLLANKQDMPGALTAEDIT 137          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 3.601e-33
Identity = 67/134 (50.00%), Postives = 96/134 (71.64%), Query Frame = 2
Query:  143 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            ++E+R+LM+GLD AGKTTIL K    +I T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A+++  I + L L S+
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDSI 147          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.703e-33
Identity = 66/134 (49.25%), Postives = 95/134 (70.90%), Query Frame = 2
Query:  143 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            ++E+R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++   I + L L S+
Sbjct:   14 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI 147          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.368e-32
Identity = 65/134 (48.51%), Postives = 95/134 (70.90%), Query Frame = 2
Query:  143 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            ++++R+LM+GLD AGKTTIL K    ++ T  PT+GFN++T+E++     +WDVGGQ  +R  WR+YF++T GLI+VVDS DR R+ + + EL  +L E+ L  A LL+FANKQDLP A++   I + L L S+
Sbjct:   14 ERDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI 147          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL4D_MOUSE (ADP-ribosylation factor-like protein 4D OS=Mus musculus GN=Arl4d PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.870e-32
Identity = 64/136 (47.06%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  152 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            + ++++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVDS + +R+ EA+ ELHR+    + +   +LV ANKQD P A++AAE+  +L +  L
Sbjct:   22 LHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDSAEIERLEEAKVELHRISKASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 157          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL4D_BOVIN (ADP-ribosylation factor-like protein 4D OS=Bos taurus GN=ARL4D PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.870e-32
Identity = 64/136 (47.06%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  152 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            + ++++GLD+AGKT++LY+LK  E V +IPT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV ANKQD P A++AAE+  +L +  L
Sbjct:   21 LHVVVIGLDSAGKTSLLYRLKFKEFVQSIPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 156          
BLAST of CK936893 vs. ExPASy Swiss-Prot
Match: ARL4D_PONAB (ADP-ribosylation factor-like protein 4D OS=Pongo abelii GN=ARL4D PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.158e-31
Identity = 63/136 (46.32%), Postives = 95/136 (69.85%), Query Frame = 2
Query:  152 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 544
            + ++++GLD+AGKT++LY+LK  E V ++PT GFN E +       + I+F VWDVGGQ+K+RPLWR Y + T GL+FVVD+ + +R+ EA+ ELHR+    + +   +LV ANKQD P A++AAE+  +L +  L
Sbjct:   22 LHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKIRVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRISRASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVREL 157          
The following BLAST results are available for this feature:
BLAST of CK936893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL4C_MOUSE5.025e-3551.39ADP-ribosylation factor-like protein 4C OS=Mus mus... [more]
ARL4C_HUMAN5.025e-3551.39ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]
ARL2_BOVIN2.111e-3350.00ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL14_HUMAN2.111e-3350.00ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARL2_HUMAN3.601e-3350.00ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL2_MOUSE4.703e-3349.25ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARL2_RAT1.368e-3248.51ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARL4D_MOUSE8.870e-3247.06ADP-ribosylation factor-like protein 4D OS=Mus mus... [more]
ARL4D_BOVIN8.870e-3247.06ADP-ribosylation factor-like protein 4D OS=Bos tau... [more]
ARL4D_PONAB1.158e-3146.32ADP-ribosylation factor-like protein 4D OS=Pongo a... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004516_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936893 ID=CK936893; Name=CK936893; organism=Citrus sinensis; type=EST; length=544bp
AGGGGGTTGTTGTTAAGCTAATAAGCTTCGTCCTCCACACCCCCCCCCCC
TCCCCTCTCTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGA
ATGGGGCTGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGA
GATGCGAATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCT
TGTACAAGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGG
TTTAATGTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGA
TGTTGGTGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGA
ACACTCAAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATT
GTAGAAGCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCG
AGATGCAGTGTTGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAA
TGAATGCTGCTGAGATTACTGATAAGCTTGGCCTCCACTCCCTC
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