CK936888

Overview
NameCK936888
Unique NameCK936888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_ZINEL (Trans-cinnamate 4-monooxygenase OS=Zinnia elegans GN=CYP73A12 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.729e-24
Identity = 53/72 (73.61%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPR 403
            G+DFRYLPFGVGRRSCP              RLVQNFELLPPPGQ K++T EKGGQFSLHILKHSTIVAKPR
Sbjct:  432 GNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQDKVDTTEKGGQFSLHILKHSTIVAKPR 503          
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_PETCR (Trans-cinnamate 4-monooxygenase OS=Petroselinum crispum GN=CYP73A10 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.085e-23
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRS 406
            G+DF+Y+PFGVGRRSCP              RLVQNFELLPPPGQSKI+TAEKGGQFSL ILKHSTIV KPRS
Sbjct:  433 GNDFKYIPFGVGRRSCPGIILALPILGIVIGRLVQNFELLPPPGQSKIDTAEKGGQFSLQILKHSTIVCKPRS 505          
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_RUTGR (Trans-cinnamate 4-monooxygenase OS=Ruta graveolens GN=CYP73A2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.200e-22
Identity = 51/73 (69.86%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRS 406
            G+DFRY+PFGVGRRSCP              R+VQNFELLPPPGQSKI+T+EKGGQFSL IL HSTIV KPRS
Sbjct:  432 GNDFRYIPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKIDTSEKGGQFSLFILNHSTIVLKPRS 504          
BLAST of CK936888 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 49/73 (67.12%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  188 GDDFRYLPFGVGRRSCPXXXXXXXXXXXXXXRLVQNFELLPPPGQSKINTAEKGGQFSLHILKHSTIVAKPRS 406
            G+DFRY+PFGVGRRSCP              R+VQNFELLPPPGQSK++T+EKGGQFSLHIL HS IV KPR+
Sbjct:  432 GNDFRYVPFGVGRRSCPGIILALPILGITIGRMVQNFELLPPPGQSKVDTSEKGGQFSLHILNHSIIVMKPRN 504          
The following BLAST results are available for this feature:
BLAST of CK936888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TCMO_ZINEL3.729e-2473.61Trans-cinnamate 4-monooxygenase OS=Zinnia elegans ... [more]
TCMO_PETCR1.085e-2372.60Trans-cinnamate 4-monooxygenase OS=Petroselinum cr... [more]
TCMO_RUTGR1.200e-2269.86Trans-cinnamate 4-monooxygenase OS=Ruta graveolens... [more]
TCMO_ARATH2.046e-2267.12Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004516_G05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IIIF_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936888 ID=CK936888; Name=CK936888; organism=Citrus sinensis; type=EST; length=595bp
GGGGACTGGAGTCCCTGTATTCATTACGTTAATCGTAAAGATGGATCTCC
TCTTGCTGGAAAAGACGCCTTTAGCCCTCTTCGCCGCCGTTGTTGTCGCC
ATTACCGTCTCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGCCC
CCTCCCCGTCCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTTCC
GTTACCTTCCTTTCGGTGTTGGGAGAAGAAGCTGCCCTGGAATTATCCTT
GCTTTGCCAATTCTTGGTATCACTATTGGGCGTTTGGTACAGAACTTTGA
GCTCTTGCCTCCTCCAGGTCAATCTAAGATTAACACTGCAGAGAAAGGTG
GGCAGTTCAGTTTGCACATTTTGAAGCACTCGACCATTGTTGCCAAGCCT
AGATCATTCTAGTTTCACAATTCCATTTGGTTGTAATGTTAAGTCTGTTT
CAAAGTGGTTGAATGGTTTCTTCAATGTCGGATCAAATCAAGTGGCAGTT
GGCTAGTTATATAATACTTGTGTAAATTTGTGAGCTTAAATCTTCAAATC
TTCATTTAAGATTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top