CK936874

Overview
NameCK936874
Unique NameCK936874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.741e-24
Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            AI+CGQV  +++PC+++ R GG  P   CC+GVRSLN AA TT DR+ ACNCLK    SI G+NA  AA +  +CGVSIPY ISP+ DCS V
Sbjct:   27 AISCGQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 53/96 (55.21%), Postives = 64/96 (66.67%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            P+  AITCG V   LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  SI GIN   AA L RQCGVS+PY ISPNT+C+ +
Sbjct:   22 PLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 3
Query:  129 VTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            V  AITCG V  SL+PC+ +L  GG   PPPCC GV+ LNG A+TTPDRQ AC CL+ A +   G+N ++A+GL  +CGVSIPY IS +T+C+ ++
Sbjct:   21 VDAAITCGTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAK---GVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  135 NAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            +AITCGQV   L  C+ + R GG  PP  CC GVR+LN  A+TTPDRQ ACNCLK       G+NA + AG+  +CGV+IPY I   TDC++VR
Sbjct:   21 SAITCGQVDSDLTSCLGYARKGGVIPPG-CCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 50/96 (52.08%), Postives = 64/96 (66.67%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            P  +A+TCGQV   LAPCI +       P   CC+GVR+LN AA TT DRQ  C CLKQ   ++ G+  ++ AG+  +CGV+IPY ISP+TDCSRV
Sbjct:   23 PAASAVTCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRV 118          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  126 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            P   +++CG+VT  LAPC+ +L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  SI GI+   AAGL   CGV+IPYKISP+TDCS V+
Sbjct:   20 PHAESLSCGEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 52/100 (52.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:  126 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSI-PGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            P+T+  A++CG V  +LA CI ++  GG  PP  CC+GV++LN  A+TTPDRQ ACNC++ A R++  G+NA  AAG+ + CGV+IPYKIS +T+C  VR
Sbjct:   20 PITSNAALSCGSVNSNLAACIGYVLQGGVIPPA-CCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC C+K A     G+NA  AAG+   CGVS+PY IS + DCS++R
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSA---AGGLNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 52/99 (52.53%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  126 PVTN--AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRVR 416
            P+T+  A++CG V+G +APCI +L       P  CC+GV SLN  ARTTPDRQ AC CL  A  ++P IN   AAGL + CGV+IPYKIS  T+C+ V+
Sbjct:   20 PITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CK936874 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.031e-23
Identity = 48/92 (52.17%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  138 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLSRQCGVSIPYKISPNTDCSRV 413
            AI+CGQV+ +L+PCI++ R  G  PP  CC+GV+ L GAA++T D+QAAC CLK    SI GIN    +G+  +CGVS+P+ IS +TDC++V
Sbjct:   26 AISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKV 117          
The following BLAST results are available for this feature:
BLAST of CK936874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLT2A_ORYSJ2.741e-2457.61Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP_BETVU3.580e-2455.21Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP4_ARATH6.106e-2454.17Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
SCA_LILLO1.042e-2354.26Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP4_ORYSJ1.777e-2352.08Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP2_SOLLC1.777e-2354.64Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP1_ARATH2.320e-2352.00Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLT41_HORVU2.320e-2352.69Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTPD_BRAOT3.031e-2352.53Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_HORVU3.031e-2352.17Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_A09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936874 ID=CK936874; Name=CK936874; organism=Citrus sinensis; type=EST; length=672bp
GGGGACTCAAGCTTGTAAACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAAAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCAGTGACTAATGCCATAACATGTG
GGCAGGTGACAGGCTCCTTGGCTCCATGCATCGCTTTCTTGAGAACTGGA
GGGCGTTTTCCTCCACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGC
AAGCTTACCGATCAATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTT
TCTCGTCAATGTGGAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGA
CTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATATATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTT
GTATCTTTGCTTTTAATATCATATTAAATATGTAAACGTGATCTGTGTTT
TGAGTGATTAATTCTAGTTATTTTGTGGTATTATCTTAAAAAGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
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