CX675210

Overview
NameCX675210
Unique NameCX675210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675210 vs. ExPASy Swiss-Prot
Match: RUXG_SCHPO (Probable small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe GN=smg1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.314e-13
Identity = 37/79 (46.84%), Postives = 61/79 (77.22%), Query Frame = -1 
Query:  247 MSRSGQPPDLKKYMDKKLQIKLNANRMIVGTLRGFDQFMNLVIDNTVE--VNGNEKNDIGMVVIRGNSVVTVEALEPVS 477
            MS++G P DLKKY+D+++ ++LN +R + G LRG+D F+N+V+++++E  V+G EK  IG V IRGNSV+ +E L+ ++
Sbjct:    1 MSKAGAP-DLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDG-EKVKIGSVAIRGNSVIMIETLDKMT 77
The following BLAST results are available for this feature:
BLAST of CX675210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RUXG_SCHPO4.314e-1346.84Probable small nuclear ribonucleoprotein G OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60E09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60E09-I18-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675210 ID=CX675210; Name=CX675210; organism=Citrus sinensis; type=EST; length=552bp
TTTTATCGAAGTGTTAAATCTTGCTGATTCATTCCATTGGTCATTCAATG
ATTAATTCTAATTACCTGTTCAAACGAGCTCCCTTAGAATAAGCATTACA
AAGAAAATGGCCTAAATTTTCTCAGGTACAACAGCATGAAACATCTCCCA
TTGCATACTAACAGCCTTAATATTCATAATAGTACACAAAGAAGATCAGA
AAGCACATTACATCGACCCCAGTGGCAAACCACGTCACTGTGATTTGCTT
ACCGGTTCAAGGGCTTCAACAGTGACTACACTATTCCCTCTGATAACCAC
CATCCCTATATCATTTTTCTCATTGCCATTGACCTCAACTGTGTTGTCAA
TCACAAGATTCATAAACTGATCAAATCCACGAAGTGTTCCAACAATCATC
CTATTAGCATTGAGCTTGATCTGAAGCTTCTTATCCATGTACTTCTTGAG
ATCCGGAGGCTGGCCTGATCTGCTCATTGTCGAAGCCTAGCGGATCGTTT
CAGAGAAAAAGCACGGAAGAAAGCAAAGCGAGTGAGCTGCAGCGAGCCCT
CG
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