CK936868 | Citrus Genome Database

Overview


Name	CK936868
Unique Name	CK936868
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	419

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_DRIGR (Photosystem II reaction center protein I OS=Drimys granadensis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_DRANE (Photosystem II reaction center protein I OS=Draba nemorosa GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_DIOEL (Photosystem II reaction center protein I OS=Dioscorea elephantipes GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_DAUCA (Photosystem II reaction center protein I OS=Daucus carota GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_CUCSA (Photosystem II reaction center protein I OS=Cucumis sativus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_CRUWA (Photosystem II reaction center protein I OS=Crucihimalaya wallichii GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_COFAR (Photosystem II reaction center protein I OS=Coffea arabica GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_CITSI (Photosystem II reaction center protein I OS=Citrus sinensis GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_CHLSC (Photosystem II reaction center protein I OS=Chloranthus spicatus GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_CERDE (Photosystem II reaction center protein I OS=Ceratophyllum demersum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 2

Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CK936868 vs. ExPASy Swiss-Prot

BLAST of CK936868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112


Match Name	E-value	Identity	Description
PSBI_DRIGR	7.187e-14	100.00	Photosystem II reaction center protein I OS=Drimys...	[more]
PSBI_DRANE	7.187e-14	100.00	Photosystem II reaction center protein I OS=Draba ...	[more]
PSBI_DIOEL	7.187e-14	100.00	Photosystem II reaction center protein I OS=Diosco...	[more]
PSBI_DAUCA	7.187e-14	100.00	Photosystem II reaction center protein I OS=Daucus...	[more]
PSBI_CUCSA	7.187e-14	100.00	Photosystem II reaction center protein I OS=Cucumi...	[more]
PSBI_CRUWA	7.187e-14	100.00	Photosystem II reaction center protein I OS=Crucih...	[more]
PSBI_COFAR	7.187e-14	100.00	Photosystem II reaction center protein I OS=Coffea...	[more]
PSBI_CITSI	7.187e-14	100.00	Photosystem II reaction center protein I OS=Citrus...	[more]
PSBI_CHLSC	7.187e-14	100.00	Photosystem II reaction center protein I OS=Chlora...	[more]
PSBI_CERDE	7.187e-14	100.00	Photosystem II reaction center protein I OS=Cerato...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004517_A03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936868 ID=CK936868; Name=CK936868; organism=Citrus sinensis; type=EST; length=419bp
GGGGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGATT
GTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTGGTGATATTCTTT
GTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCC
CGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAA
CGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAG
TGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGA
AAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGC
AATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA