CK936868

Overview
NameCK936868
Unique NameCK936868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_GNEPA (Photosystem II reaction center protein I OS=Gnetum parvifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLK+FVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKVFVYTVVIFFVSLFLFGFLSNDPGRNPGRKE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_PSEMZ (Photosystem II reaction center protein I OS=Pseudotsuga menziesii GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVY VVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_PSEJA (Photosystem II reaction center protein I OS=Pseudotsuga japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVY VVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_PINTH (Photosystem II reaction center protein I OS=Pinus thunbergii GN=psbI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVY VV+FF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVVFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_PINKO (Photosystem II reaction center protein I OS=Pinus koraiensis GN=psbI PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.355e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVY VV+FF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYAVVVFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_ZYGCR (Photosystem II reaction center protein I OS=Zygnema circumcarinatum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTV+IFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    1 MLTLKLFVYTVIIFFVSLFVFGFLSNDPSRNPGRKE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_PSINU (Photosystem II reaction center protein I OS=Psilotum nudum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLKLFVYTVVI F+SLF+FGFLSNDPGRNPGR+E
Sbjct:    1 MLTLKLFVYTVVILFISLFVFGFLSNDPGRNPGRKE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_CUSRE (Photosystem II reaction center protein I OS=Cuscuta reflexa GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            M TLKLFVYTVVIFFVSLFIFGFLSNDP RNPGREE
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGREE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_CUSEX (Photosystem II reaction center protein I OS=Cuscuta exaltata GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            M TLKLFVYTVVIFFVSLFIFGFLSNDP RNPGREE
Sbjct:    1 MFTLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGREE 36          
BLAST of CK936868 vs. ExPASy Swiss-Prot
Match: PSBI_CHAGL (Photosystem II reaction center protein I OS=Chaetosphaeridium globosum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 2
Query:   56 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 163
            MLTLK+FVYTVVIFFVSLFIFGFLSNDP RNPGR+E
Sbjct:    1 MLTLKIFVYTVVIFFVSLFIFGFLSNDPARNPGRKE 36          
The following BLAST results are available for this feature:
BLAST of CK936868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PSBI_GNEPA7.947e-1391.67Photosystem II reaction center protein I OS=Gnetum... [more]
PSBI_PSEMZ1.038e-1291.67Photosystem II reaction center protein I OS=Pseudo... [more]
PSBI_PSEJA1.038e-1291.67Photosystem II reaction center protein I OS=Pseudo... [more]
PSBI_PINTH1.355e-1288.89Photosystem II reaction center protein I OS=Pinus ... [more]
PSBI_PINKO1.355e-1288.89Photosystem II reaction center protein I OS=Pinus ... [more]
PSBI_ZYGCR1.770e-1288.89Photosystem II reaction center protein I OS=Zygnem... [more]
PSBI_PSINU1.770e-1288.89Photosystem II reaction center protein I OS=Psilot... [more]
PSBI_CUSRE1.770e-1294.44Photosystem II reaction center protein I OS=Cuscut... [more]
PSBI_CUSEX1.770e-1294.44Photosystem II reaction center protein I OS=Cuscut... [more]
PSBI_CHAGL1.770e-1291.67Photosystem II reaction center protein I OS=Chaeto... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_A03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936868 ID=CK936868; Name=CK936868; organism=Citrus sinensis; type=EST; length=419bp
GGGGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGAGATT
GTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTGGTGATATTCTTT
GTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAATCC
CGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATAAA
CGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAAAG
TGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACGGA
AAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTAGC
AATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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