CK936866

Overview
NameCK936866
Unique NameCK936866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_PSINU (Cytochrome b6 OS=Psilotum nudum GN=petB PE=3 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 3.865e-99
Identity = 173/183 (94.54%), Postives = 178/183 (97.27%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTEVNFGWL+RSVHRWSASMMVLM ILHVFRVYLTGGFK PRELTW+TGV+LAVLT SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGS SVGQSTLTRF
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEVNFGWLVRSVHRWSASMMVLMMILHVFRVYLTGGFKNPRELTWITGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_AMBTC (Cytochrome b6 OS=Amborella trichopoda GN=petB PE=3 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 3.865e-99
Identity = 177/183 (96.72%), Postives = 181/183 (98.91%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIF+CLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIP+IGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFHCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPIIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_PELHO (Cytochrome b6 OS=Pelargonium hortorum GN=petB-A PE=3 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 5.048e-99
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_PANGI (Cytochrome b6 OS=Panax ginseng GN=petB PE=3 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 5.048e-99
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVT+AFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTDAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_DAUCA (Cytochrome b6 OS=Daucus carota GN=petB PE=3 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 5.048e-99
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVT+AFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTDAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_VITVI (Cytochrome b6 OS=Vitis vinifera GN=petB PE=3 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 6.594e-99
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVL VLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_GOSHI (Cytochrome b6 OS=Gossypium hirsutum GN=petB PE=3 SV=2)

HSP 1 Score: 360.533 bits (924), Expect = 6.594e-99
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVL VLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_GOSBA (Cytochrome b6 OS=Gossypium barbadense GN=petB PE=3 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 6.594e-99
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVL VLTASFGVTGYSLP DQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_HUPLU (Cytochrome b6 OS=Huperzia lucidula GN=petB PE=3 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 8.611e-99
Identity = 174/183 (95.08%), Postives = 177/183 (96.72%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+LAVLT SFGVTGYS PWDQIGYWAVKIVTGVPEAIPV+GSPLVEL RGS SVGQSTLTRF
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSSPWDQIGYWAVKIVTGVPEAIPVVGSPLVELSRGSVSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CHAVU (Cytochrome b6 OS=Chara vulgaris GN=petB PE=3 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 8.611e-99
Identity = 172/183 (93.99%), Postives = 178/183 (97.27%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCF+VQVATGFAMTFYYRPTVTEAFAS+QYIMTEVNFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+TGVVLAVLT SFGVTGYSLPWDQIGYWAVKIVTGVPEAIP++GS LVELLRGS SVGQSTLTRF
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFIVQVATGFAMTFYYRPTVTEAFASIQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWITGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPIVGSSLVELLRGSVSVGQSTLTRF 183
The following BLAST results are available for this feature:
BLAST of CK936866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_PSINU3.865e-9994.54Cytochrome b6 OS=Psilotum nudum GN=petB PE=3 SV=1[more]
CYB6_AMBTC3.865e-9996.72Cytochrome b6 OS=Amborella trichopoda GN=petB PE=3... [more]
CYB6_PELHO5.048e-9996.72Cytochrome b6 OS=Pelargonium hortorum GN=petB-A PE... [more]
CYB6_PANGI5.048e-9996.72Cytochrome b6 OS=Panax ginseng GN=petB PE=3 SV=1[more]
CYB6_DAUCA5.048e-9996.72Cytochrome b6 OS=Daucus carota GN=petB PE=3 SV=1[more]
CYB6_VITVI6.594e-9996.72Cytochrome b6 OS=Vitis vinifera GN=petB PE=3 SV=1[more]
CYB6_GOSHI6.594e-9996.72Cytochrome b6 OS=Gossypium hirsutum GN=petB PE=3 S... [more]
CYB6_GOSBA6.594e-9996.72Cytochrome b6 OS=Gossypium barbadense GN=petB PE=3... [more]
CYB6_HUPLU8.611e-9995.08Cytochrome b6 OS=Huperzia lucidula GN=petB PE=3 SV... [more]
CYB6_CHAVU8.611e-9993.99Cytochrome b6 OS=Chara vulgaris GN=petB PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_B11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936866 ID=CK936866; Name=CK936866; organism=Citrus sinensis; type=EST; length=848bp
GCGGGACTCAAANNNACAAATCAAAGAAAATGNNNTAGGTAAATAGAAGA
TTCAAGAGGCCTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATT
TTTTGGCATTCTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTC
TTTCGTATTTTTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATT
TTCTATTCCATACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATG
AAATTCTCATATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCT
CAATAAAGTCTACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTG
CAGATGATATAACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTAT
TGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGG
GTTTGCTATGACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCT
CTGTTCAATACATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCG
GTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGT
ATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTT
GGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACA
GGTTATTCTTTACCTTGGGACCAAATTGGATATTGGGCAGTAAAAATTGT
AACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCGCCTTTGGTAGAGT
TATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTTGACTCGTTTTT
back to top