CK936866

Overview
NameCK936866
Unique NameCK936866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_SYNEL (Cytochrome b6 OS=Synechococcus elongatus GN=petB PE=3 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.744e-94
Identity = 161/183 (87.98%), Postives = 173/183 (94.54%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            +NKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFL+Q ATGFAMTFYY+PTV EAFASVQYIM EVNFGWLIRS+H+WSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAV+T SFGVTGYSLPWDQ+GYWAVKIV+G+P AIPV+G  LVEL+RG  SVGQ+TLTRF
Sbjct:    1 MNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVAEAFASVQYIMNEVNFGWLIRSIHKWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVITVSFGVTGYSLPWDQVGYWAVKIVSGIPAAIPVVGDQLVELMRGGESVGQATLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_GUITH (Cytochrome b6 OS=Guillardia theta GN=petB PE=3 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.744e-94
Identity = 162/183 (88.52%), Postives = 173/183 (94.54%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQAIADDITSKYVPPHVNIFYC+GGIT TCF++QVATGFAMTFYYRPTV EAFASV+YIMTEVN+GWL RS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV LAV+T SFGVTGYSLPWDQ+GYWA KIVTGVPEAIPV+GS LVELLRGS SVGQ+TLTRF
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCIGGITFTCFIIQVATGFAMTFYYRPTVAEAFASVEYIMTEVNYGWLFRSMHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVTLAVVTVSFGVTGYSLPWDQVGYWACKIVTGVPEAIPVVGSLLVELLRGSVSVGQATLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_MESVI (Cytochrome b6 OS=Mesostigma viride GN=petB PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.858e-93
Identity = 159/183 (86.89%), Postives = 173/183 (94.54%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWF +RLEIQ IADDITSKYVPPHVNIFYC+GGIT TCF++QVA+GFAMTFYYRPTVTEAFASVQYIMT+VNFGWLIRS+H+WSASMMVL  ILHVFRVYLTGGFKKPRELTWVTGV+LAV T SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPVIG+PLVELLRG   VGQSTLTRF
Sbjct:    1 MSKVYDWFNDRLEIQGIADDITSKYVPPHVNIFYCIGGITFTCFIMQVASGFAMTFYYRPTVTEAFASVQYIMTDVNFGWLIRSIHKWSASMMVLTMILHVFRVYLTGGFKKPRELTWVTGVILAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGAPLVELLRGGVGVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_EUGGR (Cytochrome b6 OS=Euglena gracilis GN=petB PE=1 SV=3)

HSP 1 Score: 342.428 bits (877), Expect = 1.858e-93
Identity = 159/183 (86.89%), Postives = 175/183 (95.63%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            +++VYDWFEERLEIQAIADD++SKYVPPHVNIFYCLGGIT TCF++QVATGFAMTFYYRPTVTEAF SV+YIM EVNFGWLIRS+HRWSASMMVLM ILHV RVYLTGGFKKPRELTWVTG++LA+LT SFGVTGYSLPWDQ+GYWAVKIVTGVPEAIP+IG+ +VELLRGS SVGQSTLTRF
Sbjct:    1 MSRVYDWFEERLEIQAIADDVSSKYVPPHVNIFYCLGGITFTCFIIQVATGFAMTFYYRPTVTEAFLSVKYIMNEVNFGWLIRSIHRWSASMMVLMMILHVCRVYLTGGFKKPRELTWVTGIILAILTVSFGVTGYSLPWDQVGYWAVKIVTGVPEAIPLIGNFIVELLRGSVSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CHLVU (Cytochrome b6 OS=Chlorella vulgaris GN=petB PE=3 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.858e-93
Identity = 162/183 (88.52%), Postives = 171/183 (93.44%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQ+IADDI+SKYVPPHVNIFYC+GGIT TCFLVQVATGFAMTFYYRPTV EAFASVQYIMTEVNFGWLIRS+HRWSASMMVLM ILHV RVYLTGGFKKPRELTWVTGV++AV T SFGVTGYSLPWDQIGYWAVKIVTGVP+AIPV+G  LVELLRG   VGQSTLTRF
Sbjct:    1 MGKVYDWFEERLEIQSIADDISSKYVPPHVNIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHVCRVYLTGGFKKPRELTWVTGVIMAVCTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVVGPALVELLRGGVGVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_STIHE (Cytochrome b6 OS=Stigeoclonium helveticum GN=petB PE=3 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.406e-93
Identity = 159/183 (86.89%), Postives = 172/183 (93.99%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWF+ERLEIQAIADDI+SKYVPPHVNIFYCLGGIT TCFLVQVATGFAMTFYYRPTV EAFASVQYIMTEVNFGWLIRS+HRWSASMMVLM ILHVFRV+LTGGFKKPRELTW TGV++AV T SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPV+G  +VELLRG   VGQ+TLTRF
Sbjct:    1 MSKVYDWFDERLEIQAIADDISSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVVEAFASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHVFRVWLTGGFKKPRELTWTTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGPTIVELLRGGVGVGQATLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_GRATL (Cytochrome b6 OS=Gracilaria tenuistipitata var. liui GN=petB PE=3 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.406e-93
Identity = 160/183 (87.43%), Postives = 172/183 (93.99%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            + KVYDWFEERLEIQAIADDITSKYVPPHVNIFYC+GGI  T FL+QVA+GFAMTFYYRPTV EAF+SV+YIMT+VNFGWLIRS+HRWSASMMVLM ILH+FRVYLTGGFKKPRELTWVTGV+LAVLT SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPV+G  +VELLRG  SVGQSTLTRF
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCIGGIVFTSFLIQVASGFAMTFYYRPTVAEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGSIVELLRGGVSVGQSTLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CYAME (Cytochrome b6 OS=Cyanidioschyzon merolae GN=petB PE=3 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 7.061e-93
Identity = 158/183 (86.34%), Postives = 173/183 (94.54%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWF+ERL IQ IADDITSKYVPPHVNIFYCLGG+TLTCFLVQVATGFAMTFYYRPTV EAF+SV+Y+MT+VNFGWLIRS+HRWSASMMVLM ILH+FRVYLTGGFKKPRELTW+TGV+L VLT SFGVTGYSLPWDQ+GYWA KIVTGVPEAIPV+GS LVELLRG  SVGQ+TLTRF
Sbjct:    1 MSKVYDWFQERLSIQDIADDITSKYVPPHVNIFYCLGGMTLTCFLVQVATGFAMTFYYRPTVAEAFSSVEYMMTQVNFGWLIRSLHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWITGVILGVLTVSFGVTGYSLPWDQVGYWACKIVTGVPEAIPVVGSSLVELLRGDVSVGQATLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CHLRE (Cytochrome b6 OS=Chlamydomonas reinhardtii GN=petB PE=1 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 9.222e-93
Identity = 158/183 (86.34%), Postives = 172/183 (93.99%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++KVYDWFEERLEIQAIADDITSKYVPPHVNIFYC+GGIT TCFLVQVATGFAMTFYYRPTV EAFASVQYIMT+VNFGWLIRS+HRWSASMMVLM +LHVFRVYLTGGFK+PRELTWVTGV++AV T SFGVTGYSLPWDQ+GYWAVKIVTGVP+AIP +G  +VELLRG   VGQ+TLTRF
Sbjct:    1 MSKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCIGGITFTCFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPGVGGFIVELLRGGVGVGQATLTRF 183
[Close]
BLAST of CK936866 vs. ExPASy Swiss-Prot
Match: CYB6_CHLPR (Cytochrome b6 OS=Chlorella protothecoides GN=petB PE=3 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.204e-92
Identity = 158/183 (86.34%), Postives = 172/183 (93.99%), Query Frame = 2 
Query:  299 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRF 847
            ++K+YDWFEERLEIQ+IADDI+SKYVPPHVNIFYC GGIT TCFLVQVATGFAMTFYYRPTV EAF SVQY+MT+VNFGWLIRS+HRWSASMMVLM ILH+FRVYLTGGFKKPRELTWVTGV++AV T SFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIG  L+ELLRG  +VGQSTLTRF
Sbjct:    1 MSKIYDWFEERLEIQSIADDISSKYVPPHVNIFYCFGGITFTCFLVQVATGFAMTFYYRPTVAEAFTSVQYLMTQVNFGWLIRSIHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWVTGVLMAVCTVSFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGQVLLELLRGGVAVGQSTLTRF 183
The following BLAST results are available for this feature:
BLAST of CK936866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_SYNEL3.744e-9487.98Cytochrome b6 OS=Synechococcus elongatus GN=petB P... [more]
CYB6_GUITH3.744e-9488.52Cytochrome b6 OS=Guillardia theta GN=petB PE=3 SV=... [more]
CYB6_MESVI1.858e-9386.89Cytochrome b6 OS=Mesostigma viride GN=petB PE=3 SV... [more]
CYB6_EUGGR1.858e-9386.89Cytochrome b6 OS=Euglena gracilis GN=petB PE=1 SV=... [more]
CYB6_CHLVU1.858e-9388.52Cytochrome b6 OS=Chlorella vulgaris GN=petB PE=3 S... [more]
CYB6_STIHE5.406e-9386.89Cytochrome b6 OS=Stigeoclonium helveticum GN=petB ... [more]
CYB6_GRATL5.406e-9387.43Cytochrome b6 OS=Gracilaria tenuistipitata var. li... [more]
CYB6_CYAME7.061e-9386.34Cytochrome b6 OS=Cyanidioschyzon merolae GN=petB P... [more]
CYB6_CHLRE9.222e-9386.34Cytochrome b6 OS=Chlamydomonas reinhardtii GN=petB... [more]
CYB6_CHLPR1.204e-9286.34Cytochrome b6 OS=Chlorella protothecoides GN=petB ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_B11 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936866 ID=CK936866; Name=CK936866; organism=Citrus sinensis; type=EST; length=848bp
GCGGGACTCAAANNNACAAATCAAAGAAAATGNNNTAGGTAAATAGAAGA
TTCAAGAGGCCTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATT
TTTTGGCATTCTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTC
TTTCGTATTTTTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATT
TTCTATTCCATACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATG
AAATTCTCATATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCT
CAATAAAGTCTACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTG
CAGATGATATAACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTAT
TGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGG
GTTTGCTATGACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCT
CTGTTCAATACATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCG
GTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGT
ATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTT
GGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACA
GGTTATTCTTTACCTTGGGACCAAATTGGATATTGGGCAGTAAAAATTGT
AACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCGCCTTTGGTAGAGT
TATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTTGACTCGTTTTT
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