CK936849

Overview
NameCK936849
Unique NameCK936849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ARAHI (Photosystem I reaction center subunit IX OS=Arabis hirsuta GN=psaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.651e-18
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_EUCGG (Photosystem I reaction center subunit IX OS=Eucalyptus globulus subsp. globulus GN=psaJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.679e-18
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_LACSA (Photosystem I reaction center subunit IX OS=Lactuca sativa GN=psaJ PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.804e-18
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_NYMAL (Photosystem I reaction center subunit IX OS=Nymphaea alba GN=psaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.275e-18
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDIKTYLSVAPVLTTLWFGSLAGLLIEINRLFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_POPTR (Photosystem I reaction center subunit IX OS=Populus trichocarpa GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPV+STLWFGSLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVISTLWFGSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_POPAL (Photosystem I reaction center subunit IX OS=Populus alba GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPV+STLWFGSLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVISTLWFGSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_MANES (Photosystem I reaction center subunit IX OS=Manihot esculenta GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPV+STLWFGSLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVISTLWFGSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_BARVE (Photosystem I reaction center subunit IX OS=Barbarea verna GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.195e-18
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWF SLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFASLAGLLIEINRLFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_TOBAC (Photosystem I reaction center subunit IX OS=Nicotiana tabacum GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.070e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_SOLLC (Photosystem I reaction center subunit IX OS=Solanum lycopersicum GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.070e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
The following BLAST results are available for this feature:
BLAST of CK936849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_ARAHI1.651e-18100.00Photosystem I reaction center subunit IX OS=Arabis... [more]
PSAJ_EUCGG3.679e-1897.73Photosystem I reaction center subunit IX OS=Eucaly... [more]
PSAJ_LACSA4.804e-1897.73Photosystem I reaction center subunit IX OS=Lactuc... [more]
PSAJ_NYMAL6.275e-1895.45Photosystem I reaction center subunit IX OS=Nympha... [more]
PSAJ_POPTR8.195e-1895.45Photosystem I reaction center subunit IX OS=Populu... [more]
PSAJ_POPAL8.195e-1895.45Photosystem I reaction center subunit IX OS=Populu... [more]
PSAJ_MANES8.195e-1895.45Photosystem I reaction center subunit IX OS=Maniho... [more]
PSAJ_BARVE8.195e-1897.73Photosystem I reaction center subunit IX OS=Barbar... [more]
PSAJ_TOBAC1.070e-1795.45Photosystem I reaction center subunit IX OS=Nicoti... [more]
PSAJ_SOLLC1.070e-1795.45Photosystem I reaction center subunit IX OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936849 ID=CK936849; Name=CK936849; organism=Citrus sinensis; type=EST; length=396bp
GGGGGAATACAAAAACAAAAAAGAAGGAGGNNNTTCAATGCGAGATCTAA
AAACATATCTTTCCGTGGCACCGGTACTAAGTACTCTATGGTTCGGGTCT
TTAGCAGGGTTATTGATAGAAATCAACCGTTTATTCCCCGACGCATTGAC
ATTTCCTTTTTTTTCATTCTAGTTATTGAACTGGAACGGGGTGAAGAAGA
TTAGAGCTAGAATCAGATATTTGTGACTAATCTCTCTTTCCCCTCTTTTC
GTTTTTTTGTTTTACAATTAGAAAGAAGGAAAGCGAAAGAAAAAAGGTGG
CTTCAACCTCAGCGAAACCCGGGTTCAGGCTCCGATTAAATTAATTATTA
ATTATCCAGTTAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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