CK936849

Overview
NameCK936849
Unique NameCK936849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_SOLBU (Photosystem I reaction center subunit IX OS=Solanum bulbocastanum GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.070e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_NICTO (Photosystem I reaction center subunit IX OS=Nicotiana tomentosiformis GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.070e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_NICSY (Photosystem I reaction center subunit IX OS=Nicotiana sylvestris GN=psaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.070e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_SPIOL (Photosystem I reaction center subunit IX OS=Spinacia oleracea GN=psaJ PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD KTYLSVAPVLSTLWFGSLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDFKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ORYSJ (Photosystem I reaction center subunit IX OS=Oryza sativa subsp. japonica GN=psaJ PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFFSF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ORYSI (Photosystem I reaction center subunit IX OS=Oryza sativa subsp. indica GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFFSF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ORYSA (Photosystem I reaction center subunit IX OS=Oryza sativa GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFFSF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ORYNI (Photosystem I reaction center subunit IX OS=Oryza nivara GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 41/44 (93.18%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFFSF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_FAGEA (Photosystem I reaction center subunit IX OS=Fagopyrum esculentum subsp. ancestrale GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MR+LKTYLSVAPVLSTLWFGSLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRNLKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CERDE (Photosystem I reaction center subunit IX OS=Ceratophyllum demersum GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPV+STLWFGSLAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDIKTYLSVAPVISTLWFGSLAGLLIEINRLFPDALVFPFFSF 44          
The following BLAST results are available for this feature:
BLAST of CK936849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_SOLBU1.070e-1795.45Photosystem I reaction center subunit IX OS=Solanu... [more]
PSAJ_NICTO1.070e-1795.45Photosystem I reaction center subunit IX OS=Nicoti... [more]
PSAJ_NICSY1.070e-1795.45Photosystem I reaction center subunit IX OS=Nicoti... [more]
PSAJ_SPIOL1.398e-1795.45Photosystem I reaction center subunit IX OS=Spinac... [more]
PSAJ_ORYSJ1.826e-1793.18Photosystem I reaction center subunit IX OS=Oryza ... [more]
PSAJ_ORYSI1.826e-1793.18Photosystem I reaction center subunit IX OS=Oryza ... [more]
PSAJ_ORYSA1.826e-1793.18Photosystem I reaction center subunit IX OS=Oryza ... [more]
PSAJ_ORYNI1.826e-1793.18Photosystem I reaction center subunit IX OS=Oryza ... [more]
PSAJ_FAGEA1.826e-1795.45Photosystem I reaction center subunit IX OS=Fagopy... [more]
PSAJ_CERDE1.826e-1793.18Photosystem I reaction center subunit IX OS=Cerato... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936849 ID=CK936849; Name=CK936849; organism=Citrus sinensis; type=EST; length=396bp
GGGGGAATACAAAAACAAAAAAGAAGGAGGNNNTTCAATGCGAGATCTAA
AAACATATCTTTCCGTGGCACCGGTACTAAGTACTCTATGGTTCGGGTCT
TTAGCAGGGTTATTGATAGAAATCAACCGTTTATTCCCCGACGCATTGAC
ATTTCCTTTTTTTTCATTCTAGTTATTGAACTGGAACGGGGTGAAGAAGA
TTAGAGCTAGAATCAGATATTTGTGACTAATCTCTCTTTCCCCTCTTTTC
GTTTTTTTGTTTTACAATTAGAAAGAAGGAAAGCGAAAGAAAAAAGGTGG
CTTCAACCTCAGCGAAACCCGGGTTCAGGCTCCGATTAAATTAATTATTA
ATTATCCAGTTAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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