CK936849

Overview
NameCK936849
Unique NameCK936849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CALFG (Photosystem I reaction center subunit IX OS=Calycanthus floridus var. glaucus GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLS APVL+TLWFGSLAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDIKTYLSTAPVLATLWFGSLAGLLIEINRLFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_PIPCE (Photosystem I reaction center subunit IX OS=Piper cenocladum GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.384e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDIKTYLSVAPVLATLWFGSLAGLLIEINRLFPDALVFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_LIRTU (Photosystem I reaction center subunit IX OS=Liriodendron tulipifera GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.384e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDIKTYLSVAPVLTTLWFGSLAGLLIEINRLFPDALVFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_LEPVR (Photosystem I reaction center subunit IX OS=Lepidium virginicum GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.384e-17
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_IPOPU (Photosystem I reaction center subunit IX OS=Ipomoea purpurea GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.114e-17
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD KTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDFKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_COFAR (Photosystem I reaction center subunit IX OS=Coffea arabica GN=psaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.114e-17
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD KTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDFKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_PELHO (Photosystem I reaction center subunit IX OS=Pelargonium hortorum GN=psaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLS APVLST+WFG+LAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDLKTYLSAAPVLSTIWFGALAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_DRIGR (Photosystem I reaction center subunit IX OS=Drimys granadensis GN=psaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDALTF FFSF
Sbjct:    1 MRDIKTYLSVAPVLTTLWFGSLAGLLIEINRLFPDALTFSFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CYCTA (Photosystem I reaction center subunit IX OS=Cycas taitungensis GN=psaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRD+KTYLS APVL+TLWFGSLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MRDIKTYLSTAPVLATLWFGSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CUCSA (Photosystem I reaction center subunit IX OS=Cucumis sativus GN=psaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPV+ST+WFG+LAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDLKTYLSVAPVVSTIWFGALAGLLIEINRLFPDALVFPFFSF 44          
The following BLAST results are available for this feature:
BLAST of CK936849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_CALFG1.826e-1793.18Photosystem I reaction center subunit IX OS=Calyca... [more]
PSAJ_PIPCE2.384e-1793.18Photosystem I reaction center subunit IX OS=Piper ... [more]
PSAJ_LIRTU2.384e-1793.18Photosystem I reaction center subunit IX OS=Liriod... [more]
PSAJ_LEPVR2.384e-17100.00Photosystem I reaction center subunit IX OS=Lepidi... [more]
PSAJ_IPOPU3.114e-1793.18Photosystem I reaction center subunit IX OS=Ipomoe... [more]
PSAJ_COFAR3.114e-1793.18Photosystem I reaction center subunit IX OS=Coffea... [more]
PSAJ_PELHO5.312e-1790.91Photosystem I reaction center subunit IX OS=Pelarg... [more]
PSAJ_DRIGR5.312e-1793.18Photosystem I reaction center subunit IX OS=Drimys... [more]
PSAJ_CYCTA5.312e-1790.91Photosystem I reaction center subunit IX OS=Cycas ... [more]
PSAJ_CUCSA5.312e-1790.91Photosystem I reaction center subunit IX OS=Cucumi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936849 ID=CK936849; Name=CK936849; organism=Citrus sinensis; type=EST; length=396bp
GGGGGAATACAAAAACAAAAAAGAAGGAGGNNNTTCAATGCGAGATCTAA
AAACATATCTTTCCGTGGCACCGGTACTAAGTACTCTATGGTTCGGGTCT
TTAGCAGGGTTATTGATAGAAATCAACCGTTTATTCCCCGACGCATTGAC
ATTTCCTTTTTTTTCATTCTAGTTATTGAACTGGAACGGGGTGAAGAAGA
TTAGAGCTAGAATCAGATATTTGTGACTAATCTCTCTTTCCCCTCTTTTC
GTTTTTTTGTTTTACAATTAGAAAGAAGGAAAGCGAAAGAAAAAAGGTGG
CTTCAACCTCAGCGAAACCCGGGTTCAGGCTCCGATTAAATTAATTATTA
ATTATCCAGTTAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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