CK936849

Overview
NameCK936849
Unique NameCK936849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_PANGI (Photosystem I reaction center subunit IX OS=Panax ginseng GN=psaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.937e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_GOSHI (Photosystem I reaction center subunit IX OS=Gossypium hirsutum GN=psaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.937e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_GOSBA (Photosystem I reaction center subunit IX OS=Gossypium barbadense GN=psaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.937e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_DAUCA (Photosystem I reaction center subunit IX OS=Daucus carota GN=psaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.937e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRFFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_VITVI (Photosystem I reaction center subunit IX OS=Vitis vinifera GN=psaJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.061e-17
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 166
            MRDLKTYLS APVLST+WFGSLAGLLIEINRLFPDALTFPFF+
Sbjct:    1 MRDLKTYLSTAPVLSTIWFGSLAGLLIEINRLFPDALTFPFFN 43          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ILLOL (Photosystem I reaction center subunit IX OS=Illicium oligandrum GN=psaJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.061e-17
Identity = 40/44 (90.91%), Postives = 43/44 (97.73%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MR++KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRNIKTYLSVAPVLATLWFGSLAGLLIEINRLFPDALAFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_SOYBN (Photosystem I reaction center subunit IX OS=Glycine max GN=psaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.183e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPV+STLWFG+LAGLLIEINR FPDAL FPFFSF
Sbjct:    1 MRDLKTYLSVAPVVSTLWFGALAGLLIEINRFFPDALIFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_PHAVU (Photosystem I reaction center subunit IX OS=Phaseolus vulgaris GN=psaJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.183e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPV+STLWFG+LAGLLIEINR FPDAL FPFFSF
Sbjct:    1 MRDLKTYLSVAPVVSTLWFGALAGLLIEINRFFPDALIFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_SOLTU (Photosystem I reaction center subunit IX OS=Solanum tuberosum GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_HELAN (Photosystem I reaction center subunit IX OS=Helianthus annuus GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFF 42          
The following BLAST results are available for this feature:
BLAST of CK936849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_PANGI6.937e-1797.62Photosystem I reaction center subunit IX OS=Panax ... [more]
PSAJ_GOSHI6.937e-1797.62Photosystem I reaction center subunit IX OS=Gossyp... [more]
PSAJ_GOSBA6.937e-1797.62Photosystem I reaction center subunit IX OS=Gossyp... [more]
PSAJ_DAUCA6.937e-1797.62Photosystem I reaction center subunit IX OS=Daucus... [more]
PSAJ_VITVI9.061e-1793.02Photosystem I reaction center subunit IX OS=Vitis ... [more]
PSAJ_ILLOL9.061e-1790.91Photosystem I reaction center subunit IX OS=Illici... [more]
PSAJ_SOYBN1.183e-1690.91Photosystem I reaction center subunit IX OS=Glycin... [more]
PSAJ_PHAVU1.183e-1690.91Photosystem I reaction center subunit IX OS=Phaseo... [more]
PSAJ_SOLTU1.546e-1695.24Photosystem I reaction center subunit IX OS=Solanu... [more]
PSAJ_HELAN1.546e-1695.24Photosystem I reaction center subunit IX OS=Helian... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936849 ID=CK936849; Name=CK936849; organism=Citrus sinensis; type=EST; length=396bp
GGGGGAATACAAAAACAAAAAAGAAGGAGGNNNTTCAATGCGAGATCTAA
AAACATATCTTTCCGTGGCACCGGTACTAAGTACTCTATGGTTCGGGTCT
TTAGCAGGGTTATTGATAGAAATCAACCGTTTATTCCCCGACGCATTGAC
ATTTCCTTTTTTTTCATTCTAGTTATTGAACTGGAACGGGGTGAAGAAGA
TTAGAGCTAGAATCAGATATTTGTGACTAATCTCTCTTTCCCCTCTTTTC
GTTTTTTTGTTTTACAATTAGAAAGAAGGAAAGCGAAAGAAAAAAGGTGG
CTTCAACCTCAGCGAAACCCGGGTTCAGGCTCCGATTAAATTAATTATTA
ATTATCCAGTTAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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