CK936849

Overview
NameCK936849
Unique NameCK936849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_GUIAB (Photosystem I reaction center subunit IX OS=Guizotia abyssinica GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CICAR (Photosystem I reaction center subunit IX OS=Cicer arietinum GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.546e-16
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPV STLWF +LAGLLIEINRLFPDALTFPFFSF
Sbjct:    1 MRDLKTYLSVAPVASTLWFVALAGLLIEINRLFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_OENPA (Photosystem I reaction center subunit IX OS=Oenothera parviflora GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 166
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_OENGL (Photosystem I reaction center subunit IX OS=Oenothera glazioviana GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 166
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_OENEH (Photosystem I reaction center subunit IX OS=Oenothera elata subsp. hookeri GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 166
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_OENBI (Photosystem I reaction center subunit IX OS=Oenothera biennis GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 166
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_OENAR (Photosystem I reaction center subunit IX OS=Oenothera argillicola GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 166
            MRDLKTYLSVAPVLS LWFG+LAGLLIEINR FPDALTFPFFS
Sbjct:    1 MRDLKTYLSVAPVLSALWFGALAGLLIEINRFFPDALTFPFFS 43          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_LOTJA (Photosystem I reaction center subunit IX OS=Lotus japonicus GN=psaJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.018e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MRDLKTYLSVAPV+STLWF +LAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRDLKTYLSVAPVVSTLWFAALAGLLIEINRLFPDALIFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_WHEAT (Photosystem I reaction center subunit IX OS=Triticum aestivum GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_SORBI (Photosystem I reaction center subunit IX OS=Sorghum bicolor GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
The following BLAST results are available for this feature:
BLAST of CK936849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_GUIAB1.546e-1695.24Photosystem I reaction center subunit IX OS=Guizot... [more]
PSAJ_CICAR1.546e-1693.18Photosystem I reaction center subunit IX OS=Cicer ... [more]
PSAJ_OENPA2.018e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_OENGL2.018e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_OENEH2.018e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_OENBI2.018e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_OENAR2.018e-1693.02Photosystem I reaction center subunit IX OS=Oenoth... [more]
PSAJ_LOTJA2.018e-1690.91Photosystem I reaction center subunit IX OS=Lotus ... [more]
PSAJ_WHEAT2.636e-1692.86Photosystem I reaction center subunit IX OS=Tritic... [more]
PSAJ_SORBI2.636e-1692.86Photosystem I reaction center subunit IX OS=Sorghu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936849 ID=CK936849; Name=CK936849; organism=Citrus sinensis; type=EST; length=396bp
GGGGGAATACAAAAACAAAAAAGAAGGAGGNNNTTCAATGCGAGATCTAA
AAACATATCTTTCCGTGGCACCGGTACTAAGTACTCTATGGTTCGGGTCT
TTAGCAGGGTTATTGATAGAAATCAACCGTTTATTCCCCGACGCATTGAC
ATTTCCTTTTTTTTCATTCTAGTTATTGAACTGGAACGGGGTGAAGAAGA
TTAGAGCTAGAATCAGATATTTGTGACTAATCTCTCTTTCCCCTCTTTTC
GTTTTTTTGTTTTACAATTAGAAAGAAGGAAAGCGAAAGAAAAAAGGTGG
CTTCAACCTCAGCGAAACCCGGGTTCAGGCTCCGATTAAATTAATTATTA
ATTATCCAGTTAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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