CK936849

Overview
NameCK936849
Unique NameCK936849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_SACOF (Photosystem I reaction center subunit IX OS=Saccharum officinarum GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_SACHY (Photosystem I reaction center subunit IX OS=Saccharum hybrid GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_PLAOC (Photosystem I reaction center subunit IX OS=Platanus occidentalis GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRFFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_MAIZE (Photosystem I reaction center subunit IX OS=Zea mays GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_LOLPR (Photosystem I reaction center subunit IX OS=Lolium perenne GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_HORVU (Photosystem I reaction center subunit IX OS=Hordeum vulgare GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CAPBU (Photosystem I reaction center subunit IX OS=Capsella bursa-pastoris GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWF SLAGLLIEINRLFPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFVSLAGLLIEINRLFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_AGRST (Photosystem I reaction center subunit IX OS=Agrostis stolonifera GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVLSTLWFG+LAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MRDIKTYLSVAPVLSTLWFGALAGLLIEINRLFPDALSFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_MORIN (Photosystem I reaction center subunit IX OS=Morus indica GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.443e-16
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 166
            MR+LKTYLSVAPV+STLWFGSLAGLLIEINRLFPDAL FPFFS
Sbjct:    1 MRNLKTYLSVAPVVSTLWFGSLAGLLIEINRLFPDALIFPFFS 43          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CHLSC (Photosystem I reaction center subunit IX OS=Chloranthus spicatus GN=psaJ PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.443e-16
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDAL FPFF
Sbjct:    1 MRDIKTYLSVAPVLATLWFGSLAGLLIEINRLFPDALAFPFF 42          
The following BLAST results are available for this feature:
BLAST of CK936849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_SACOF2.636e-1692.86Photosystem I reaction center subunit IX OS=Saccha... [more]
PSAJ_SACHY2.636e-1692.86Photosystem I reaction center subunit IX OS=Saccha... [more]
PSAJ_PLAOC2.636e-1692.86Photosystem I reaction center subunit IX OS=Platan... [more]
PSAJ_MAIZE2.636e-1692.86Photosystem I reaction center subunit IX OS=Zea ma... [more]
PSAJ_LOLPR2.636e-1692.86Photosystem I reaction center subunit IX OS=Lolium... [more]
PSAJ_HORVU2.636e-1692.86Photosystem I reaction center subunit IX OS=Hordeu... [more]
PSAJ_CAPBU2.636e-1697.62Photosystem I reaction center subunit IX OS=Capsel... [more]
PSAJ_AGRST2.636e-1692.86Photosystem I reaction center subunit IX OS=Agrost... [more]
PSAJ_MORIN3.443e-1693.02Photosystem I reaction center subunit IX OS=Morus ... [more]
PSAJ_CHLSC3.443e-1692.86Photosystem I reaction center subunit IX OS=Chlora... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936849 ID=CK936849; Name=CK936849; organism=Citrus sinensis; type=EST; length=396bp
GGGGGAATACAAAAACAAAAAAGAAGGAGGNNNTTCAATGCGAGATCTAA
AAACATATCTTTCCGTGGCACCGGTACTAAGTACTCTATGGTTCGGGTCT
TTAGCAGGGTTATTGATAGAAATCAACCGTTTATTCCCCGACGCATTGAC
ATTTCCTTTTTTTTCATTCTAGTTATTGAACTGGAACGGGGTGAAGAAGA
TTAGAGCTAGAATCAGATATTTGTGACTAATCTCTCTTTCCCCTCTTTTC
GTTTTTTTGTTTTACAATTAGAAAGAAGGAAAGCGAAAGAAAAAAGGTGG
CTTCAACCTCAGCGAAACCCGGGTTCAGGCTCCGATTAAATTAATTATTA
ATTATCCAGTTAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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