CK936849

Overview
NameCK936849
Unique NameCK936849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_WELMI (Photosystem I reaction center subunit IX OS=Welwitschia mirabilis GN=psaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.670e-16
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            M+D+KTYLS APVL+TLWF SLAGLLIEINR FPDALTFPFFSF
Sbjct:    1 MQDIKTYLSTAPVLATLWFSSLAGLLIEINRFFPDALTFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_PHAAO (Photosystem I reaction center subunit IX OS=Phalaenopsis aphrodite subsp. formosana GN=psaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.670e-16
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFS 166
            M+D+KTYLS APVL+TLWFGSLAGLLIEINRLFPDAL+FPFFS
Sbjct:    1 MQDIKTYLSTAPVLTTLWFGSLAGLLIEINRLFPDALSFPFFS 43          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ACOCL (Photosystem I reaction center subunit IX OS=Acorus calamus GN=psaJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.670e-16
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            M+D+KTYLSVAPVL+TLWFGSLAGLLIEINRLFPDAL+FPFF
Sbjct:    1 MQDIKTYLSVAPVLTTLWFGSLAGLLIEINRLFPDALSFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_DIOEL (Photosystem I reaction center subunit IX OS=Dioscorea elephantipes GN=psaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.002e-15
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFFSF 169
            MR++KTYLS  PVL+TLWFGSLAGLLIEINRLFPDAL FPFFSF
Sbjct:    1 MRNIKTYLSTVPVLTTLWFGSLAGLLIEINRLFPDALLFPFFSF 44          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_LEMMI (Photosystem I reaction center subunit IX OS=Lemna minor GN=psaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            M+DLKTYLSVAPVLSTLWFG LAGLLIEINRLFPDAL FPFF
Sbjct:    1 MQDLKTYLSVAPVLSTLWFGILAGLLIEINRLFPDALLFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_ATRBE (Photosystem I reaction center subunit IX OS=Atropa belladonna GN=psaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRDLKTYLSVAPVLSTLWF +LAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDLKTYLSVAPVLSTLWFVALAGLLIEINRFFPDALTFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_AETGR (Photosystem I reaction center subunit IX OS=Aethionema grandiflora GN=psaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFP 157
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPD LTFP
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDGLTFP 40          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_AETCO (Photosystem I reaction center subunit IX OS=Aethionema cordifolium GN=psaJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFP 157
            MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPD LTFP
Sbjct:    1 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDGLTFP 40          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_AMBTC (Photosystem I reaction center subunit IX OS=Amborella trichopoda GN=psaJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 37/42 (88.10%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD+KTYLSVAPVL+TLWFG+LAGLLIEINR FPDAL FPFF
Sbjct:    1 MRDIKTYLSVAPVLTTLWFGALAGLLIEINRFFPDALAFPFF 42          
BLAST of CK936849 vs. ExPASy Swiss-Prot
Match: PSAJ_CUSEX (Photosystem I reaction center subunit IX OS=Cuscuta exaltata GN=psaJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.493e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 2
Query:   38 MRDLKTYLSVAPVLSTLWFGSLAGLLIEINRLFPDALTFPFF 163
            MRD KTYLS APVLSTLW G+LAGLLIEINR FPDALTFPFF
Sbjct:    1 MRDFKTYLSAAPVLSTLWLGALAGLLIEINRFFPDALTFPFF 42          
The following BLAST results are available for this feature:
BLAST of CK936849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PSAJ_WELMI7.670e-1686.36Photosystem I reaction center subunit IX OS=Welwit... [more]
PSAJ_PHAAO7.670e-1688.37Photosystem I reaction center subunit IX OS=Phalae... [more]
PSAJ_ACOCL7.670e-1690.48Photosystem I reaction center subunit IX OS=Acorus... [more]
PSAJ_DIOEL1.002e-1586.36Photosystem I reaction center subunit IX OS=Diosco... [more]
PSAJ_LEMMI1.709e-1592.86Photosystem I reaction center subunit IX OS=Lemna ... [more]
PSAJ_ATRBE1.709e-1592.86Photosystem I reaction center subunit IX OS=Atropa... [more]
PSAJ_AETGR1.709e-1597.50Photosystem I reaction center subunit IX OS=Aethio... [more]
PSAJ_AETCO1.709e-1597.50Photosystem I reaction center subunit IX OS=Aethio... [more]
PSAJ_AMBTC2.232e-1588.10Photosystem I reaction center subunit IX OS=Ambore... [more]
PSAJ_CUSEX6.493e-1588.10Photosystem I reaction center subunit IX OS=Cuscut... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936849 ID=CK936849; Name=CK936849; organism=Citrus sinensis; type=EST; length=396bp
GGGGGAATACAAAAACAAAAAAGAAGGAGGNNNTTCAATGCGAGATCTAA
AAACATATCTTTCCGTGGCACCGGTACTAAGTACTCTATGGTTCGGGTCT
TTAGCAGGGTTATTGATAGAAATCAACCGTTTATTCCCCGACGCATTGAC
ATTTCCTTTTTTTTCATTCTAGTTATTGAACTGGAACGGGGTGAAGAAGA
TTAGAGCTAGAATCAGATATTTGTGACTAATCTCTCTTTCCCCTCTTTTC
GTTTTTTTGTTTTACAATTAGAAAGAAGGAAAGCGAAAGAAAAAAGGTGG
CTTCAACCTCAGCGAAACCCGGGTTCAGGCTCCGATTAAATTAATTATTA
ATTATCCAGTTAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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