CK936847

Overview
NameCK936847
Unique NameCK936847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_YARLI (FACT complex subunit SPT16 OS=Yarrowia lipolytica GN=SPT16 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.651e-27
Identity = 81/233 (34.76%), Postives = 121/233 (51.93%), Query Frame = 3
Query:    9 VGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQ-TNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAE----------ANGTEALPSKTTLR------SDNQEISKEELRRQHQ----AELARQKNEE 644
            +G+RY  YCSN+ R+F+I+ T  Q + YEVL+   E    ++K G K    Y AA+S ++ +AP+L  +L K+ G  IG++FR++   LNAK  R       F+VS+GFQNL N    +PKN+ +SL L DTV V      V+T  +  A+ +V Y F        + K K E          A  T +  ++T LR       +N +  K++ +  H+    A L R KN E
Sbjct:  272 LGTRYKGYCSNVGRTFMINPTKAQEQNYEVLVGLREKVFDSIKVGAKACDVYNAAVSYIKSKAPKLEAHLLKTIGWSIGIDFRDAKFLLNAKCQREIVDGSTFDVSLGFQNLTNSAATDPKNKTYSLALVDTVRVTRAGVAVLTDSAPVALSEVTYFFEDDDEDAEKEKKKKEQAKKEKKQQQAAATVSSITRTKLRHEARAEDNNDQKRKDDQKALHEKLNKAGLERFKNTE 504          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_EMENI (FACT complex subunit spt16 OS=Emericella nidulans GN=spt16 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.816e-27
Identity = 71/218 (32.57%), Postives = 111/218 (50.92%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALP---SKTTLRSDNQ---EISKEELRRQHQAELARQKNEE 644
            G RY +Y S I R++L+D T  Q   Y +LL  HEA +   + G      Y  A+ +V    PEL  +  K+ G GIG+E R+S + LN KN RV K+ M F++++G  +++     + K  ++S+++ DTV VGE  P V T  +   +  V++ F          K K E   +       ++T LR++         E  RR+HQ ELA +K +E
Sbjct:  284 GIRYKTYSSIIGRTYLVDPTKSQEANYSLLLSVHEAVLKEARDGVVAKELYNKAIGIVRARKPELESHFVKNVGAGIGIELRDSNMILNGKNTRVLKSGMTFSITVGLVDVEEPSVKDKKKNVYSMMITDTVRVGEQGPHVFTKDAGIDMDSVSFYFGDEEEPQKPAKEKKETKSSAIASRNVTRTKLRAERPTQVNEGAEARRREHQKELAAKKTKE 501          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_DEBHA (FACT complex subunit SPT16 OS=Debaryomyces hansenii GN=SPT16 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.677e-27
Identity = 75/214 (35.05%), Postives = 117/214 (54.67%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGAL-KPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSD--------NQEISKEELRRQHQA 617
            ++G RY SYCSN+AR+F ID TP     Y+ LLK        L + G   S  YQ AL  ++ E P+LV + TK+ G  +G+EFR+S   LN+KN+R  +   I ++++GF NL N + + PK + +SL+L DT  V E+ P ++T    KA  + ++ F           VK+E  G + L S+  ++++        N +I K +LR +  A
Sbjct:  284 SLGLRYKSYCSNVARTFFIDPTPAMETNYDFLLKLQNHVTSTLLRDGTVASQVYQGALDFIKSEKPDLVQHFTKNCGWLMGIEFRDSTFVLNSKNERKLQNGQIISLTLGFSNLTNDKASNPKLKQYSLILTDTFKVSESEPILLT-TYPKARSETSFYFKDDEP----TAVKSENGGDKKLKSEKNIKTEKNLAANEANSKILKSKLRHESSA 492          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_NEUCR (FACT complex subunit spt-16 OS=Neurospora crassa GN=spt-16 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.272e-27
Identity = 76/221 (34.39%), Postives = 116/221 (52.49%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKN-QMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSK----TTLRSDNQEISKEEL---RRQHQAELARQKNEE 644
            A+G RY SYCS IAR+F++D    Q   Y+ LL  H   +  ++ G  V   Y  A + V  + P+L  +  K+ G GIGLE ++  L LN KN R  K  M   V+ GF ++QN   + KN +++SL+L+DT+ V  + P V T ++   V   ++ F         PK +   +   A+ +K    T LRS+      E+    RR+HQ ELA++K +E
Sbjct:  286 AMGLRYKSYCSQIARTFMVDPNKSQESNYKFLLAVHNLILKEIRDGAIVKDVYTKAYNFVRSKKPDLEKHFLKNVGFGIGLENKDPTLILNNKNTRTLKDGMTLVVTTGFSDIQNPNPQDKNSKVYSLILSDTIRVTSSEPVVFTGEAPVDVDATSFFFKDEEEAQPTPKKEKRDSRVGAVATKNITSTRLRSERNTTVDEDADKRRREHQKELAQKKQKE 506          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_ASPFU (FACT complex subunit spt16 OS=Aspergillus fumigatus GN=spt16 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.070e-26
Identity = 74/219 (33.79%), Postives = 119/219 (54.34%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQN-QTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPS----KTTLRSDN-QEISK--EELRRQHQAELARQKNEE 644
            G RY +Y S IAR++L+D +  Q   Y  LL  HEA +  ++ G      Y  A++++  + PEL  +  KS G GIG+E R+  + LN KN R  K+ M  ++++G  ++++ +    K+  +S+++ DTV VGEN P V T  +   +  V++ F          K K EA  T A+ S    +T LR++   +I++  E  RR+HQ ELA +K  E
Sbjct:  283 GIRYKTYSSMIARTYLVDPSKSQETNYAFLLALHEAVMRDVRDGTIAKDLYNKAINLIRTKKPELESHFVKSVGAGIGIELRDPNMVLNGKNSRTLKSGMTLSITVGLTDVEDPELKGSKSSTYSMIITDTVRVGENGPHVFTKDAGLDMDSVSFYFGDEEEPQKPIKEKKEAK-TSAIASRNITRTKLRAERPTQINEGAEARRREHQKELAAKKTRE 500          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_ASPOR (FACT complex subunit spt16 OS=Aspergillus oryzae GN=spt16 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.384e-26
Identity = 68/218 (31.19%), Postives = 115/218 (52.75%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKN-QMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANG---TEALPSKTTLRSDNQ---EISKEELRRQHQAELARQKNEE 644
            G RY +Y S IAR++L+D +  Q   Y  LL  H+  +  ++ G      +  A+ +V  + PEL  +  KS G GIG+E R+S + LN KN+++ K+ M  ++++G  +++   ++ KN  ++S+++ DTV VGEN P + T  +   +  V++ F          K K E      T    ++T LR++         E  RR+HQ ELA +K +E
Sbjct:  305 GIRYKTYSSIIARTYLVDPSKSQEANYAFLLNLHDTVMKDVRDGTMAKDLFNKAIGLVRAKKPELESHFVKSVGAGIGIELRDSNMVLNGKNNKILKSGMTLSITVGLTDVEELESKDKNTAVYSMIITDTVRVGENGPHIFTKDAGIDMDSVSFYFGDEEEPQKPAKEKKEVKSNAMTSRNVTRTKLRAERPTQVNEGAEARRREHQKELATKKTKE 522          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_USTMA (FACT complex subunit SPT16 OS=Ustilago maydis GN=SPT16 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.442e-25
Identity = 70/219 (31.96%), Postives = 117/219 (53.42%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAH-EAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEAN-GTEALPSKTTLRSDNQEISKE----ELRRQHQAELARQKNEE 644
            ++G +Y +YCSNI R++LID    Q K+Y  L +   + A   L+ G      Y  A+ +V  +  +LV +  K+ G GIGLEFR+S   L+AKN+R  +  M+ N+S+GFQ+L +  +  K +++SLLL DT+ + +N P        +   D+++ F          + ++ A    +  P    LR+ N+  + +    E  + HQ ELA+QK E+
Sbjct:  288 SMGIKYRNYCSNIGRTYLIDPHNSQQKMYAFLHEIQTQLADKHLRAGATCKEIYSKAVEIVRAKDEKLVASFVKNVGFGIGLEFRDSAYVLSAKNNRALQRDMVVNLSVGFQDLDDPNH--KGEVYSLLLIDTLRINDNAPATFLTDRVRGTNDMSFFFKDDEEEEEEEERRSPAKPDGKVTPGGKVLRNKNRGAAHDDTAAEKMKLHQKELAKQKQED 504          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_YEAST (FACT complex subunit SPT16 OS=Saccharomyces cerevisiae GN=SPT16 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.871e-25
Identity = 74/218 (33.94%), Postives = 112/218 (51.38%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAH-EAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKND-RVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIV--GENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTT----------LRSDNQEISKEELRRQHQAEL 623
            G RYN+YCSNI R+FLID +   +  Y+ LL    E     LKPG      Y++ +  +E+  PELVPN TK+ G+ IGLEFR+S   LN KND R  +    FN+S GF NL++  +      ++L LADTV +   E  P       +KA   +++ FN       + K  + A    + P + +           R   ++  KE++R+++Q +L
Sbjct:  291 GIRYNNYCSNITRTFLIDPSEEMANNYDFLLTLQKEIVTNILKPGRTPKEVYESVIEYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYRKIQRGDCFNISFGFNNLKDSQSA---NNYALQLADTVQIPLDETEPPRFLTNYTKAKSQISFYFNNEEEDNNKKK-SSPATKVPSKPDRNSKILRTKLRGEARGGAEDAQKEQIRKENQKKL 504          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_CANGA (FACT complex subunit SPT16 OS=Candida glabrata GN=SPT16 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.491e-24
Identity = 75/221 (33.94%), Postives = 121/221 (54.75%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAI-GALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKND-RVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXR-----PKVKAEANG-TEALPSKT--TLRSDNQEISKEELRRQHQAELARQKNEE 644
            G RYN+YCSN  R+FLID +      Y  LL   +  I   LK G      Y++ +  +++  PEL  N TK+ G+ IGLEFR+S   LN+KND R  +    FN+S GF  L++      N  ++L LADTVI+ E+ P+++T + +K+   V++ FN       +      K+    +G ++ L SK     R ++Q+  KE++R+++Q +L  +  +E
Sbjct:  291 GIRYNNYCSNTTRTFLIDPSEEMVNNYVFLLDLQKHIIENELKAGRTGKEVYESVVEFIKKVRPELAGNFTKNIGSLIGLEFRDSFFVLNSKNDKRKIQVGDCFNISFGFNALKDMKT---NTNYALQLADTVILNEDGPKILT-EYTKSKSQVSFYFNNDEVEKEKKPAASTKIPTNLDGNSKILRSKLRGDARGESQDAQKEQIRKENQRKLHEKLQKE 507          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_CAEEL (FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.177e-23
Identity = 70/218 (32.11%), Postives = 111/218 (50.92%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLT-KSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIV-GENNPEVVTCKSSKAVKDVAYSF------NXXXXXXXRPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNE 641
            G+R + YC+N+ R+ LI  +      YE +L A  A I ALKPG K+S  Y+  +  +  ++P+L   L  K  G   G+EFRES L ++AK D V KA M+F V IG  ++ N+    K +  ++ ++DT++V  E + E++T K+   +K     F              + K+      +  L  +T  ++ N     EELR++ Q EL  Q NE
Sbjct:  275 GARLSEYCTNLTRTMLIFPSSELETAYEAILAAELAVIAALKPGAKLSDVYKIGIDTLTEKSPKLAETLNKKELGFATGIEFRESRLAISAKCDEVVKAGMVFIVYIGVDSIPNKNKGEKGKPAAIAISDTILVKEEGDNEILTEKAKSRLKSNVIKFKEEQENREAEKDNDQKKMLGRGQRSVVLTDQTRNKTTN-----EELRKERQKELGVQLNE 487          
The following BLAST results are available for this feature:
BLAST of CK936847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SPT16_YARLI1.651e-2734.76FACT complex subunit SPT16 OS=Yarrowia lipolytica ... [more]
SPT16_EMENI2.816e-2732.57FACT complex subunit spt16 OS=Emericella nidulans ... [more]
SPT16_DEBHA3.677e-2735.05FACT complex subunit SPT16 OS=Debaryomyces hanseni... [more]
SPT16_NEUCR6.272e-2734.39FACT complex subunit spt-16 OS=Neurospora crassa G... [more]
SPT16_ASPFU1.070e-2633.79FACT complex subunit spt16 OS=Aspergillus fumigatu... [more]
SPT16_ASPOR2.384e-2631.19FACT complex subunit spt16 OS=Aspergillus oryzae G... [more]
SPT16_USTMA3.442e-2531.96FACT complex subunit SPT16 OS=Ustilago maydis GN=S... [more]
SPT16_YEAST5.871e-2533.94FACT complex subunit SPT16 OS=Saccharomyces cerevi... [more]
SPT16_CANGA6.491e-2433.94FACT complex subunit SPT16 OS=Candida glabrata GN=... [more]
SPT16_CAEEL7.177e-2332.11FACT complex subunit spt-16 OS=Caenorhabditis eleg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_D06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936847 ID=CK936847; Name=CK936847; organism=Citrus sinensis; type=EST; length=811bp
GGGGTGCAGTTGGGTCACGGTATAACAGTTACTGCTCGAACATTGCCAGG
TCATTCTTGATTGATGCCACTCCCTTGCAGAGCAAGGTGTACGAGGTTCT
TCTGAAAGCTCATGAAGCAGCTATTGGTGCTCTGAAGCCTGGGAACAAGG
TTAGTGCTGCTTACCAGGCTGCCCTTTCAGTGGTTGAGAGGGAGGCACCT
GAGTTGGTTCCGAATTTAACAAAATCTGCCGGCACAGGTATCGGCCTTGA
GTTTCGTGAGTCTGGTCTAAATCTGAATGCCAAGAATGATCGAGTGGCGA
AAGCAAAAATGATTTTTAATGTGTCAATTGGTTTCCAGAACTTGCAGAAC
CAGACCAATGAGCCAAAGAATCAGATGTTTTCTCTGTTACTTGCTGACAC
AGTTATTGTTGGTGAAAATAATCCGGAGGTGGTGACTTGCAAGAGCTCGA
AAGCTGTTAAGGATGTTGCTTACTCATTTAATGAGGATGAGGAAGAAGAA
GAAAGGCCTAAAGTGAAAGCTGAGGCTAATGGCACAGAAGCCTTGCCATC
TAAAACAACACTCAGATCTGATAATCAGGAGATTTCGAAAGAGGAGCTTC
GGAGGCAGCATCAGGCAGAACTTGCTCGTCAGAAGAATGAAGAAACTGGT
AGGAGACTTGCTGGTGGGGGAAGCGGGGCTGGAGATAATCGTGCTTCTGC
TAAAACAACGACTGATTTGATTGCCTATAAGAACGTTAATGATCTTCTTC
CTCCAAGAGATTTTTGATGATTCAGATTGACCAGAAAAATNNNGGCAGTA
CTCTTTCNNAT
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