CK936847

Overview
NameCK936847
Unique NameCK936847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_ASHGO (FACT complex subunit SPT16 OS=Ashbya gossypii GN=SPT16 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.224e-22
Identity = 74/224 (33.04%), Postives = 121/224 (54.02%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIG-ALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKND-RVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSK---------TTLRSDN--QEISKEELRRQHQAELARQKNEE 644
            G RY +YCSNI+R+FLID +   +  Y+ LL   E  I   L+ G      Y  A++ +  + PEL    TK+ G+ +GLEFR+S   LN KND R  +    FN+S+GF NL++         ++L LADTV +    P+V+T   +K+   +++ FN         KVK+E + T ++P+K         + LR ++  ++  KE++R+++Q +L  +   E
Sbjct:  291 GIRYKNYCSNISRTFLIDPSDEMTDNYDFLLLLQEEIINNLLRVGATPKQIYDGAVNYINSKKPELSAGFTKNVGSLMGLEFRDSQFVLNNKNDYRKVENGDCFNISLGFNNLKDSKT---GASYALQLADTVQLTSGGPKVLT-NYTKSRSQISFYFN--NEDDGTTKVKSEESKTASIPTKPDPKSKILRSKLRGESRAEDDEKEQIRKENQRKLHEKLQRE 508          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_CANAL (FACT complex subunit SPT16 OS=Candida albicans GN=SPT16 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.727e-22
Identity = 79/246 (32.11%), Postives = 126/246 (51.22%), Query Frame = 3
Query:    6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAI-GALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAK-NDRVAKAKMIFNVSIGFQNL-----------QNQTNEPKN-QMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFN--------XXXXXXXRPKVKAEANGT--------EALPSKTTLRSDN---QEISKEELRRQHQAELARQKNEE 644
            ++G RY SYCSNIAR+FLID T      Y+ LL+  +  +   LK G   +  YQ  +  +++E P+LV + TK+ G  +G+EFR+S   LNAK  DR      I +++IGF NL            N+TN  KN Q ++LLL DT+ + +++  ++T   SK    +++SFN               RP +   +N T             K+ LR +N    + + E+LR++ Q +L  ++ +E
Sbjct:  288 SIGLRYKSYCSNIARTFLIDPTSEMETNYDFLLQLQKYIVDNLLKDGVPANKVYQDTIDYIKKERPDLVNHFTKNCGWLLGMEFRDSTFILNAKTTDRKLTTGQIISLTIGFNNLSNDKNDKNDKNDNKTNHQKNKQTYALLLTDTIKITDDSSILLT-NYSKDRAAISFSFNDDNETQKENNNNNNKRPGLSQTSNTTGLKLESTENTAILKSKLRHENTNADDANSEKLRQEIQIKLHEKRLQE 532          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_CAEBR (FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.353e-21
Identity = 67/217 (30.88%), Postives = 109/217 (50.23%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSA-GTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIV-GENNPEVVTCKSSKAVKDVAYSF------NXXXXXXXRPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKN 638
            G+R + YC+N+ R+ LI  +      YE +L A  A I ALKPG K+   Y+  +  +  + P+L   L K   G   G+EFRES L++NAK + V K  M+F V IG  ++ N+    K +  ++ ++DT++V  E + EV+T K+   +K     F              + K+      +  L  +T  ++ N     E+LR++ Q EL +Q N
Sbjct:  274 GARLSDYCTNLTRTMLIFPSAELEAAYEAILAAEFAVIAALKPGVKLKDVYKIGVDTLTEKNPKLAETLNKKELGFATGIEFRESRLSINAKCEEVVKEGMVFIVYIGVDSIPNKNKGEKGKPAAIAISDTILVKAEGDNEVLTEKAKSRLKSNVIKFKEEQENRETERDTDQKKLLGRGQRSVVLNDQTRNKTTN-----EDLRKERQKELGKQLN 485          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNE (FACT complex subunit SPT16 OS=Cryptococcus neoformans GN=SPT16 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20
Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 3
Query:    9 VGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKV--KAEANGTEALPSKTTL 563
            +G RY +YCSN+ R+FLI  +  Q   Y  LL+  + A+  LK G   S  Y +    +E +   L  +  K+ G   G+E+R+S   LNAKN+R  K  M+  ++IG  +L +  N  K + +SLLL+DTV +G+N   V+T +    + DV            +P++  K + N +   P  +T+
Sbjct:  285 MGIRYKNYCSNMGRTFLISPSKKQETQYTTLLEVRKEALALLKTGAVASDVYNSVHQSLETKNATLADSFLKNLGFATGMEYRDSSFLLNAKNNRELKENMVLVLTIGVADLPDAKN--KGKTYSLLLSDTVKIGQNGAVVLT-EGCTRLSDVVMDMEEEEEEDVKPQIDKKPKINNSPKKPRSSTV 468          
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_KLULA (FACT complex subunit SPT16 OS=Kluyveromyces lactis GN=SPT16 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.552e-20
Identity = 69/223 (30.94%), Postives = 117/223 (52.47%), Query Frame = 3
Query:   12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIG-ALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAK-NDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPS--------KTTLRSDNQ--EISKEELRRQHQAELARQKNEE 644
            G RY +YCSNI R+FLID T   +  Y+ LL   E  I   LK     ++ Y+  L  ++ + PEL+ + TK+ G+ +GLEFR+S   +NAK           +N+S+GF NL++       Q++++ LADTV +  +       K +KA   +++ FN          VK+E +   ALP         ++ LR +++  +  KE++R+++Q +L  +  +E
Sbjct:  291 GIRYKNYCSNITRTFLIDPTDEMTDNYDFLLILQEKIIDDLLKVEADPTSIYEKTLEFIKEKKPELLSHFTKNVGSLMGLEFRDSAGMINAKPTAHKISENCCYNISLGFGNLKDSKT---GQVYAVQLADTVQLSSDGKPSTLTKYTKARSQISFYFN-NEEENKAATVKSEKSKPPALPKPDGTSKILRSKLRGESRADDEEKEQIRKENQRKLHERLQKE 509          
The following BLAST results are available for this feature:
BLAST of CK936847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SPT16_ASHGO1.224e-2233.04FACT complex subunit SPT16 OS=Ashbya gossypii GN=S... [more]
SPT16_CANAL2.727e-2232.11FACT complex subunit SPT16 OS=Candida albicans GN=... [more]
SPT16_CAEBR1.353e-2130.88FACT complex subunit spt-16 OS=Caenorhabditis brig... [more]
SPT16_CRYNE1.146e-2032.09FACT complex subunit SPT16 OS=Cryptococcus neoform... [more]
SPT16_KLULA2.552e-2030.94FACT complex subunit SPT16 OS=Kluyveromyces lactis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_D06 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936847 ID=CK936847; Name=CK936847; organism=Citrus sinensis; type=EST; length=811bp
GGGGTGCAGTTGGGTCACGGTATAACAGTTACTGCTCGAACATTGCCAGG
TCATTCTTGATTGATGCCACTCCCTTGCAGAGCAAGGTGTACGAGGTTCT
TCTGAAAGCTCATGAAGCAGCTATTGGTGCTCTGAAGCCTGGGAACAAGG
TTAGTGCTGCTTACCAGGCTGCCCTTTCAGTGGTTGAGAGGGAGGCACCT
GAGTTGGTTCCGAATTTAACAAAATCTGCCGGCACAGGTATCGGCCTTGA
GTTTCGTGAGTCTGGTCTAAATCTGAATGCCAAGAATGATCGAGTGGCGA
AAGCAAAAATGATTTTTAATGTGTCAATTGGTTTCCAGAACTTGCAGAAC
CAGACCAATGAGCCAAAGAATCAGATGTTTTCTCTGTTACTTGCTGACAC
AGTTATTGTTGGTGAAAATAATCCGGAGGTGGTGACTTGCAAGAGCTCGA
AAGCTGTTAAGGATGTTGCTTACTCATTTAATGAGGATGAGGAAGAAGAA
GAAAGGCCTAAAGTGAAAGCTGAGGCTAATGGCACAGAAGCCTTGCCATC
TAAAACAACACTCAGATCTGATAATCAGGAGATTTCGAAAGAGGAGCTTC
GGAGGCAGCATCAGGCAGAACTTGCTCGTCAGAAGAATGAAGAAACTGGT
AGGAGACTTGCTGGTGGGGGAAGCGGGGCTGGAGATAATCGTGCTTCTGC
TAAAACAACGACTGATTTGATTGCCTATAAGAACGTTAATGATCTTCTTC
CTCCAAGAGATTTTTGATGATTCAGATTGACCAGAAAAATNNNGGCAGTA
CTCTTTCNNAT
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