CK936847
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_ASHGO (FACT complex subunit SPT16 OS=Ashbya gossypii GN=SPT16 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.224e-22 Identity = 74/224 (33.04%), Postives = 121/224 (54.02%), Query Frame = 3 Query: 12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIG-ALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKND-RVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSK---------TTLRSDN--QEISKEELRRQHQAELARQKNEE 644 G RY +YCSNI+R+FLID + + Y+ LL E I L+ G Y A++ + + PEL TK+ G+ +GLEFR+S LN KND R + FN+S+GF NL++ ++L LADTV + P+V+T +K+ +++ FN KVK+E + T ++P+K + LR ++ ++ KE++R+++Q +L + E Sbjct: 291 GIRYKNYCSNISRTFLIDPSDEMTDNYDFLLLLQEEIINNLLRVGATPKQIYDGAVNYINSKKPELSAGFTKNVGSLMGLEFRDSQFVLNNKNDYRKVENGDCFNISLGFNNLKDSKT---GASYALQLADTVQLTSGGPKVLT-NYTKSRSQISFYFN--NEDDGTTKVKSEESKTASIPTKPDPKSKILRSKLRGESRAEDDEKEQIRKENQRKLHEKLQRE 508
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_CANAL (FACT complex subunit SPT16 OS=Candida albicans GN=SPT16 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.727e-22 Identity = 79/246 (32.11%), Postives = 126/246 (51.22%), Query Frame = 3 Query: 6 AVGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAI-GALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAK-NDRVAKAKMIFNVSIGFQNL-----------QNQTNEPKN-QMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFN--------XXXXXXXRPKVKAEANGT--------EALPSKTTLRSDN---QEISKEELRRQHQAELARQKNEE 644 ++G RY SYCSNIAR+FLID T Y+ LL+ + + LK G + YQ + +++E P+LV + TK+ G +G+EFR+S LNAK DR I +++IGF NL N+TN KN Q ++LLL DT+ + +++ ++T SK +++SFN RP + +N T K+ LR +N + + E+LR++ Q +L ++ +E Sbjct: 288 SIGLRYKSYCSNIARTFLIDPTSEMETNYDFLLQLQKYIVDNLLKDGVPANKVYQDTIDYIKKERPDLVNHFTKNCGWLLGMEFRDSTFILNAKTTDRKLTTGQIISLTIGFNNLSNDKNDKNDKNDNKTNHQKNKQTYALLLTDTIKITDDSSILLT-NYSKDRAAISFSFNDDNETQKENNNNNNKRPGLSQTSNTTGLKLESTENTAILKSKLRHENTNADDANSEKLRQEIQIKLHEKRLQE 532
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_CAEBR (FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.353e-21 Identity = 67/217 (30.88%), Postives = 109/217 (50.23%), Query Frame = 3 Query: 12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSA-GTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIV-GENNPEVVTCKSSKAVKDVAYSF------NXXXXXXXRPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKN 638 G+R + YC+N+ R+ LI + YE +L A A I ALKPG K+ Y+ + + + P+L L K G G+EFRES L++NAK + V K M+F V IG ++ N+ K + ++ ++DT++V E + EV+T K+ +K F + K+ + L +T ++ N E+LR++ Q EL +Q N Sbjct: 274 GARLSDYCTNLTRTMLIFPSAELEAAYEAILAAEFAVIAALKPGVKLKDVYKIGVDTLTEKNPKLAETLNKKELGFATGIEFRESRLSINAKCEEVVKEGMVFIVYIGVDSIPNKNKGEKGKPAAIAISDTILVKAEGDNEVLTEKAKSRLKSNVIKFKEEQENRETERDTDQKKLLGRGQRSVVLNDQTRNKTTN-----EDLRKERQKELGKQLN 485
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNE (FACT complex subunit SPT16 OS=Cryptococcus neoformans GN=SPT16 PE=3 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.146e-20 Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = 3 Query: 9 VGSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIGALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAKNDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKV--KAEANGTEALPSKTTL 563 +G RY +YCSN+ R+FLI + Q Y LL+ + A+ LK G S Y + +E + L + K+ G G+E+R+S LNAKN+R K M+ ++IG +L + N K + +SLLL+DTV +G+N V+T + + DV +P++ K + N + P +T+ Sbjct: 285 MGIRYKNYCSNMGRTFLISPSKKQETQYTTLLEVRKEALALLKTGAVASDVYNSVHQSLETKNATLADSFLKNLGFATGMEYRDSSFLLNAKNNRELKENMVLVLTIGVADLPDAKN--KGKTYSLLLSDTVKIGQNGAVVLT-EGCTRLSDVVMDMEEEEEEDVKPQIDKKPKINNSPKKPRSSTV 468
BLAST of CK936847 vs. ExPASy Swiss-Prot
Match: SPT16_KLULA (FACT complex subunit SPT16 OS=Kluyveromyces lactis GN=SPT16 PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.552e-20 Identity = 69/223 (30.94%), Postives = 117/223 (52.47%), Query Frame = 3 Query: 12 GSRYNSYCSNIARSFLIDATPLQSKVYEVLLKAHEAAIG-ALKPGNKVSAAYQAALSVVEREAPELVPNLTKSAGTGIGLEFRESGLNLNAK-NDRVAKAKMIFNVSIGFQNLQNQTNEPKNQMFSLLLADTVIVGENNPEVVTCKSSKAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPS--------KTTLRSDNQ--EISKEELRRQHQAELARQKNEE 644 G RY +YCSNI R+FLID T + Y+ LL E I LK ++ Y+ L ++ + PEL+ + TK+ G+ +GLEFR+S +NAK +N+S+GF NL++ Q++++ LADTV + + K +KA +++ FN VK+E + ALP ++ LR +++ + KE++R+++Q +L + +E Sbjct: 291 GIRYKNYCSNITRTFLIDPTDEMTDNYDFLLILQEKIIDDLLKVEADPTSIYEKTLEFIKEKKPELLSHFTKNVGSLMGLEFRDSAGMINAKPTAHKISENCCYNISLGFGNLKDSKT---GQVYAVQLADTVQLSSDGKPSTLTKYTKARSQISFYFN-NEEENKAATVKSEKSKPPALPKPDGTSKILRSKLRGESRADDEEKEQIRKENQRKLHERLQKE 509 The following BLAST results are available for this feature:
BLAST of CK936847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK936847 ID=CK936847; Name=CK936847; organism=Citrus sinensis; type=EST; length=811bpback to top |