CX675203

Overview
NameCX675203
Unique NameCX675203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363
            ++  A + T  SH++NLI GV++G+  KM  VYAHFP+   +    K++ I NFLGEKK R  ++L    V  S    +E+++ G + E V ++AA I QK  +K  D R F DGIY+++K
Sbjct:   60 KEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKVEG--KTLVIGNFLGEKKPRIAKILGETKVKVSG---NEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    4 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIE 360
            KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   D  I I NFLGEK  R+  +    +V   +   +EL + G  IE V ++AA I Q   V +KD R F DG+Y+ E
Sbjct:   57 KTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTPVRGDTSV---EVDGEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.004e-15
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    4 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELI-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363
            KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+   +  IE  NFLGEK  RR  +     V    ++  E++ L G   E V ++AA I Q   V +KD R F DG+Y+ +K
Sbjct:   62 KTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRRTPIRGDTNV----QIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363
            +K  A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NFLGE+  R+ +++ G  V  S K +D + + G + E V ++ A I Q   +K +D R F DGIY+++K
Sbjct:   62 KKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKVQG--KIVTIDNFLGERSPRKAKII-GDDVKVSVKGED-VTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363
            +K  A I T  +H+ N+ITGVT G+ Y M+ V+AHFP+   + N D  + I NFLGE+  R  +++    V+      DE+ + G + E V ++ A + Q   +K +D R F DGIY+I K
Sbjct:   62 KKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV-NKD-VVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 41/121 (33.88%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363
            R+  A +    ++++N+  GVT+G+ YK++ VY+HFP    +   +  + I NF+GE   R  E++D        + +D +I+ G D E V ++AA + Q  ++K++D R F DGIY++EK
Sbjct:   79 RRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQD-IIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363
            ++  A + T  SH++NL+ GV +G+  KM  +YAHFP+   +    K++ I NFLGEKK R  ++L    V  S    +E+ + G + E V ++AA I QK  +K  D R F DGIY+++K
Sbjct:   61 KEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKVDG--KTLIIGNFLGEKKPRIAKILGETKVKVSG---NEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363
            ++  A + T  SH++NL+ GV +G+  KM  VYAHFP+   +    K++ I NFLGEKK R  +++    V  S    +++ + G + E V ++AA I QK  +K  D R F DGIY+++K
Sbjct:   60 KEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKVDG--KTLIIGNFLGEKKPRFAKIIGETKVKVSG---NDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12
Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    7 TSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIE 360
            T   + T  S  + LI GVTKG+ Y M+  + HFP+  S+   DK I + NFLGEK  R  +++DG  V     VK D + ++G D   +  +AA I +  ++++ D R F DGI++++
Sbjct:   63 TKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSV-RGDKLI-VENFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFLLK 175          
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 1
Query:   19 IRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKG 366
            + T  S + N++ G+ +G++Y+M+  Y+HFP+  S+    K++ I NF GE+  R  E++    V     VK D L L+G   + V  +AA I +   +K  D R F DGIY+I KG
Sbjct:   67 VGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISKG 177          
The following BLAST results are available for this feature:
BLAST of CX675203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RL6_METMA1.186e-1640.5050S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_NATPD5.887e-1640.3450S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_HALWD1.004e-1542.1550S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_METST3.816e-1538.8450S ribosomal protein L6P OS=Methanosphaera stadtm... [more]
RL6_METS33.816e-1538.0250S ribosomal protein L6P OS=Methanobrevibacter sm... [more]
RL6_METKA3.816e-1533.8850S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_METBF3.816e-1538.8450S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_METAC3.816e-1538.0250S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_PICTO1.357e-1236.1350S ribosomal protein L6P OS=Picrophilus torridus ... [more]
RL6_THEVO2.315e-1235.9050S ribosomal protein L6P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60E05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60E05-I10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675203 ID=CX675203; Name=CX675203; organism=Citrus sinensis; type=EST; length=570bp
CGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCT
CATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACG
CTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAG
ATCCGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGA
CGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTG
ATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAG
AAATGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGATCTA
TGTCATTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAAT
TTTATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTTTGC
CCTGTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAATTTTGGTATTAGAG
AGTTTTAGATTTCTGCTTCACTCCATGTACTTTTGTTCCAATATGTATCA
NATGGATTTTATACCTAAAA
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