CX675203
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16 Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363 ++ A + T SH++NLI GV++G+ KM VYAHFP+ + K++ I NFLGEKK R ++L V S +E+++ G + E V ++AA I QK +K D R F DGIY+++K Sbjct: 60 KEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKVEG--KTLVIGNFLGEKKPRIAKILGETKVKVSG---NEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16 Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 1 Query: 4 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIE 360 KT + + T SHV N+ GVT+G+ Y M Y+HFP+ S+ D I I NFLGEK R+ + +V + +EL + G IE V ++AA I Q V +KD R F DG+Y+ E Sbjct: 57 KTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTPVRGDTSV---EVDGEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.004e-15 Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 4 KTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELI-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363 KTSA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + IE NFLGEK RR + V ++ E++ L G E V ++AA I Q V +KD R F DG+Y+ +K Sbjct: 62 KTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRRTPIRGDTNV----QIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15 Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363 +K A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NFLGE+ R+ +++ G V S K +D + + G + E V ++ A I Q +K +D R F DGIY+++K Sbjct: 62 KKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKVQG--KIVTIDNFLGERSPRKAKII-GDDVKVSVKGED-VTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15 Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 1 Query: 1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363 +K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N D + I NFLGE+ R +++ V+ DE+ + G + E V ++ A + Q +K +D R F DGIY+I K Sbjct: 62 KKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV-NKD-VVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15 Identity = 41/121 (33.88%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363 R+ A + ++++N+ GVT+G+ YK++ VY+HFP + + + I NF+GE R E++D + +D +I+ G D E V ++AA + Q ++K++D R F DGIY++EK Sbjct: 79 RRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQD-IIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15 Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363 ++ A + T SH++NL+ GV +G+ KM +YAHFP+ + K++ I NFLGEKK R ++L V S +E+ + G + E V ++AA I QK +K D R F DGIY+++K Sbjct: 61 KEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKVDG--KTLIIGNFLGEKKPRIAKILGETKVKVSG---NEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15 Identity = 46/121 (38.02%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 1 RKTSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEK 363 ++ A + T SH++NL+ GV +G+ KM VYAHFP+ + K++ I NFLGEKK R +++ V S +++ + G + E V ++AA I QK +K D R F DGIY+++K Sbjct: 60 KEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKVDG--KTLIIGNFLGEKKPRFAKIIGETKVKVSG---NDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 175
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-12 Identity = 43/119 (36.13%), Postives = 68/119 (57.14%), Query Frame = 1 Query: 7 TSAAIRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIE 360 T + T S + LI GVTKG+ Y M+ + HFP+ S+ DK I + NFLGEK R +++DG V VK D + ++G D + +AA I + ++++ D R F DGI++++ Sbjct: 63 TKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSV-RGDKLI-VENFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFLLK 175
BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_THEVO (50S ribosomal protein L6P OS=Thermoplasma volcanium GN=rpl6p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12 Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 1 Query: 19 IRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVK-DELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKG 366 + T S + N++ G+ +G++Y+M+ Y+HFP+ S+ K++ I NF GE+ R E++ V VK D L L+G + V +AA I + +K D R F DGIY+I KG Sbjct: 67 VGTWASEISNMVKGLKEGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGETQV----SVKGDRLFLNGPSKKDVGETAANIERATIIKGFDPRVFQDGIYLISKG 177 The following BLAST results are available for this feature:
BLAST of CX675203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675203 ID=CX675203; Name=CX675203; organism=Citrus sinensis; type=EST; length=570bpback to top |