CX675203

Overview
NameCX675203
Unique NameCX675203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675203 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.735e-12
Identity = 40/116 (34.48%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:   19 IRTALSHVQNLITGVTKGYRYKMRFVYAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVIEKG 366
            + T  S + N+I G+  G++Y+M+  Y+HFP+  S+    K++ I NF GE+  R  E++   TV       D + + G   + V  +AA I +   +K  D R F DGIY+I KG
Sbjct:   67 VGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSVKG--KTVVIENFFGERSPRTAEIVGDTTVTVKG---DRVYIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISKG 177
The following BLAST results are available for this feature:
BLAST of CX675203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RL6_THEAC6.735e-1234.4850S ribosomal protein L6P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_60E05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-60E05-I10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675203 ID=CX675203; Name=CX675203; organism=Citrus sinensis; type=EST; length=570bp
CGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAACCT
CATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCTACG
CTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATTGAG
ATCCGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCTTGA
CGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTCTTG
ATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAATCAG
AAATGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGATCTA
TGTCATTGAGAAGGGCACAATTGTTGGAGAGGATTAGTTAGCTTTCAAAT
TTTATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTTTGC
CCTGTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAATTTTGGTATTAGAG
AGTTTTAGATTTCTGCTTCACTCCATGTACTTTTGTTCCAATATGTATCA
NATGGATTTTATACCTAAAA
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