CK936844

Overview
NameCK936844
Unique NameCK936844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: QKI_FELCA (Protein quaking OS=Felis catus GN=QKI PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  547 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLNE LHVL+
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLI 155          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: QKI_CHICK (Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  547 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLNE LHVL+
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLI 155          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: QKI_CANFA (Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  547 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLNE LHVL+
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLI 155          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: QKI_BOVIN (Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  547 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLNE LHVL+
Sbjct:   78 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLI 155          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: QKIB_XENLA (Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  547 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLNE LHVL+
Sbjct:   79 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLI 156          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: QKIA_XENLA (Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query:  547 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P+V+   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLNE LHVL+
Sbjct:   79 PIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLI 156          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: QKIA_DANRE (Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 9.384e-20
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1
Query:  538 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P  P+V    +L VPV +YP++NFVGRILGPRG + K++EA T C++ +RGR S++D  KEE+ + KP +EHLNE LHVL+
Sbjct:   75 PVGPIVHLQEKLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQNRGKPNWEHLNEDLHVLI 155          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: QKIB_DANRE (Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = 1
Query:  547 PVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P+ +   +L VPV +YP+FNFVGRILGPRG + K++EA T C++ +RG+GS++D  KEE+ + KP +EHLNE LHVL+
Sbjct:   78 PIAQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLI 155          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: HOW_DROME (Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.730e-19
Identity = 64/201 (31.84%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  178 PPSGVHASPHRSSSLPLDRERYLAELLAERQKLGPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLV 780
            P +  H +P +          YLA+LL +R++L  F  V     RLL +EI R+                    SL Q NG                    +  P   P           P   VV    ++ VPV ++P+FNFVGRILGPRG + K++E  T C++ +RG+GS++D  KE+  + KP +EHL++ LHVL+
Sbjct:   57 PMTPQHLTPQQQQQSTQSIADYLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRA------------------SLFQING-------------------VKKEPLTLPE----------PEGSVVTMNEKVYVPVREHPDFNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKKEDANRGKPNWEHLSDDLHVLI 210          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 63/189 (33.33%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  226 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            +  E+YL EL+AE+  L P FV      SRLL++EI +  G                       +GR  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E
Sbjct:    1 MGEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGRKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIE 136          
The following BLAST results are available for this feature:
BLAST of CK936844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
QKI_FELCA4.212e-2056.41Protein quaking OS=Felis catus GN=QKI PE=2 SV=1[more]
QKI_CHICK4.212e-2056.41Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2[more]
QKI_CANFA4.212e-2056.41Protein quaking OS=Canis familiaris GN=QKI PE=2 SV... [more]
QKI_BOVIN4.212e-2056.41Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1[more]
QKIB_XENLA4.212e-2056.41Protein quaking-B OS=Xenopus laevis GN=qki-B PE=1 ... [more]
QKIA_XENLA4.212e-2056.41Protein quaking-A OS=Xenopus laevis GN=qki-A PE=1 ... [more]
QKIA_DANRE9.384e-2054.32Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2[more]
QKIB_DANRE1.226e-1955.13Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1[more]
HOW_DROME2.730e-1931.84Protein held out wings OS=Drosophila melanogaster ... [more]
KHDR2_RAT1.657e-1633.33KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_D03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936844 ID=CK936844; Name=CK936844; organism=Citrus sinensis; type=EST; length=793bp
GCGGGGGAGGCANNNACAGGGACTCAAAACACGACACTACTCTTTCATCC
CCCATCTCCATCTCCATCTCCACCTCCACCTCCACCTCCACCGCCTCTCT
CTCCTTCCCATTCCGACCACCACCATCATCATAATCGAATGGGAGAGAGA
CTCACCCCTGGAAGTTACTTCCAGTACCCTCCTTCAGGAGTTCACGCTTC
TCCTCATAGGTCTTCTTCTTTGCCTTTAGATCGTGAAAGGTATTTGGCTG
AATTATTGGCAGAAAGGCAAAAGTTAGGACCATTTGTCCAAGTTTTGCCT
CTATGCAGCAGGCTTCTCAGTCAAGAAATCAGACGAATAACGGGTTACAA
TCCAAGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTAGGT
CGTTAGGTCAGCCAAATGGAAGACCAATGGATTTGGAGGGTTTGTCTGCA
ATGCAAACTGAGGAAAATGGGCACCTTCAAAGAATGGCCCCTTTTCAAAC
TCCTCCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACACCTG
TTGTAAAGAGAGTTATTAGACTTGATGTTCCTGTGGATAAATATCCAAAT
TTTAATTTTGTCGGCCGGATTTTGGGACCGCGTGGGAACTCGCTCAAAAG
AGTCGAAGCCATGACAGAATGTAGGGTGTTCATTAGAGGCCGGGGTTCAG
TCAAGGATTCAATAAAGGAAGAAAAACTTAAAGATAAACCTGGATATGAG
CATCTTAATGAGCCACTGCACGTGTTAGTGGAGGCCGANTTTN
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