CK936844

Overview
NameCK936844
Unique NameCK936844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 62/189 (32.80%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  226 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            ++ E+YL EL+AE+  L P FV      SRLL++EI +  G                       +G+  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E
Sbjct:    1 MEEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIE 136          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 62/189 (32.80%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  226 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            +  E+YL EL+AE+  L P FV      SRLL++EI +  G                       +G+  D         EE  +L                   + +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HL++ LHVL+E
Sbjct:    1 MGEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIE 136          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 62/189 (32.80%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  226 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            ++ E+YL EL+AE+  L P FV  +    RLL +EI +                               D EG      +E+G  + +                I +   +K   R+ +PV +YP FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D IKEE+L+  D+  + HL++ LHVL+E
Sbjct:    1 MEEEKYLPELMAEKDSLDPSFVHAM----RLLDEEIVKF-----------------------------QDSEG-----NKEDGEKKYL---------------DIISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLE 136          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: GLD1_CAEEL (Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 36/82 (43.90%), Postives = 57/82 (69.51%), Query Frame = 1
Query:  538 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVE 783
            P   ++    ++ VP ++YP++NFVGRILGPRG + K++E  T C++ +RG+GS++D  KE   + K  +EHL + LHVLV+
Sbjct:  198 PAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQ 279          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 59/189 (31.22%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  226 LDRERYLAELLAERQKL-GPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            +D+++YL EL+AE++ L   FV  +    RLL++EI             E+FE D                      +  ++G +++                 I +   +K   R+ +PV +YP FNFVG++LGPRGNS+KR++  T  ++ I G+GS++D  KEE+L+   +  Y HL+  LHVL+E
Sbjct:    1 MDQDKYLPELVAEKESLDASFVHAM----RLLAEEI-------------EKFEGD----------------------ELRKDGEVKKYLD--------------IISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIE 136          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  568 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIE 232          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  568 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIE 232          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  568 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIE 232          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  568 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            R+ +PV +YP FNFVG+ILGP+GN++KR++  T  ++ + G+GS++D  KEE+L+    P Y HLN  LHV +E
Sbjct:  142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIE 215          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  577 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIE 132          
The following BLAST results are available for this feature:
BLAST of CK936844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
KHDR2_HUMAN1.657e-1632.80KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_MOUSE3.690e-1632.80KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_XENTR4.820e-1632.80KH domain-containing, RNA-binding, signal transduc... [more]
GLD1_CAEEL1.831e-1543.90Female germline-specific tumor suppressor gld-1 OS... [more]
KHDR2_DANRE3.124e-1531.22KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_RAT1.187e-1448.65KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_MOUSE1.187e-1448.65KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_HUMAN1.187e-1448.65KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK1.187e-1448.65KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_RAT2.025e-1452.11KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_D03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936844 ID=CK936844; Name=CK936844; organism=Citrus sinensis; type=EST; length=793bp
GCGGGGGAGGCANNNACAGGGACTCAAAACACGACACTACTCTTTCATCC
CCCATCTCCATCTCCATCTCCACCTCCACCTCCACCTCCACCGCCTCTCT
CTCCTTCCCATTCCGACCACCACCATCATCATAATCGAATGGGAGAGAGA
CTCACCCCTGGAAGTTACTTCCAGTACCCTCCTTCAGGAGTTCACGCTTC
TCCTCATAGGTCTTCTTCTTTGCCTTTAGATCGTGAAAGGTATTTGGCTG
AATTATTGGCAGAAAGGCAAAAGTTAGGACCATTTGTCCAAGTTTTGCCT
CTATGCAGCAGGCTTCTCAGTCAAGAAATCAGACGAATAACGGGTTACAA
TCCAAGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTAGGT
CGTTAGGTCAGCCAAATGGAAGACCAATGGATTTGGAGGGTTTGTCTGCA
ATGCAAACTGAGGAAAATGGGCACCTTCAAAGAATGGCCCCTTTTCAAAC
TCCTCCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACACCTG
TTGTAAAGAGAGTTATTAGACTTGATGTTCCTGTGGATAAATATCCAAAT
TTTAATTTTGTCGGCCGGATTTTGGGACCGCGTGGGAACTCGCTCAAAAG
AGTCGAAGCCATGACAGAATGTAGGGTGTTCATTAGAGGCCGGGGTTCAG
TCAAGGATTCAATAAAGGAAGAAAAACTTAAAGATAAACCTGGATATGAG
CATCTTAATGAGCCACTGCACGTGTTAGTGGAGGCCGANTTTN
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