CK936844
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16 Identity = 62/189 (32.80%), Postives = 94/189 (49.74%), Query Frame = 1 Query: 226 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 ++ E+YL EL+AE+ L P FV SRLL++EI + G +G+ D EE +L + + +K R+ +PV +YP FNFVG++LGPRGNSLKR++ T ++ I G+GS++D KEE+L+ + Y HL++ LHVL+E Sbjct: 1 MEEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIE 136
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16 Identity = 62/189 (32.80%), Postives = 93/189 (49.21%), Query Frame = 1 Query: 226 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 + E+YL EL+AE+ L P FV SRLL++EI + G +G+ D EE +L + + +K R+ +PV +YP FNFVG++LGPRGNSLKR++ T ++ I G+GS++D KEE+L+ + Y HL++ LHVL+E Sbjct: 1 MGEEKYLPELMAEKDSLDPSFVHA----SRLLAEEIEKFQG----------------------SDGKKED---------EEKKYLD------------------VISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIE 136
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16 Identity = 62/189 (32.80%), Postives = 95/189 (50.26%), Query Frame = 1 Query: 226 LDRERYLAELLAERQKLGP-FVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 ++ E+YL EL+AE+ L P FV + RLL +EI + D EG +E+G + + I + +K R+ +PV +YP FNFVG++LGPRGNSLKR++ T ++ I G+GS++D IKEE+L+ D+ + HL++ LHVL+E Sbjct: 1 MEEEKYLPELMAEKDSLDPSFVHAM----RLLDEEIVKF-----------------------------QDSEG-----NKEDGEKKYL---------------DIISNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLE 136
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: GLD1_CAEEL (Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis elegans GN=gld-1 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15 Identity = 36/82 (43.90%), Postives = 57/82 (69.51%), Query Frame = 1 Query: 538 PTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVE 783 P ++ ++ VP ++YP++NFVGRILGPRG + K++E T C++ +RG+GS++D KE + K +EHL + LHVLV+ Sbjct: 198 PAGDMISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAHRGKANWEHLEDDLHVLVQ 279
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15 Identity = 59/189 (31.22%), Postives = 96/189 (50.79%), Query Frame = 1 Query: 226 LDRERYLAELLAERQKL-GPFVQVLPLCSRLLSQEIRRITGYNPSFVDHERFEHDSPFRSLGQPNGRPMDLEGLSAMQTEENGHLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 +D+++YL EL+AE++ L FV + RLL++EI E+FE D + ++G +++ I + +K R+ +PV +YP FNFVG++LGPRGNS+KR++ T ++ I G+GS++D KEE+L+ + Y HL+ LHVL+E Sbjct: 1 MDQDKYLPELVAEKESLDASFVHAM----RLLAEEI-------------EKFEGD----------------------ELRKDGEVKKYLD--------------IISNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIE 136
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14 Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 568 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 R+ +PV +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN LHV +E Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIE 232
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14 Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 568 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 R+ +PV +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN LHV +E Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIE 232
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14 Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 568 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 R+ +PV +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN LHV +E Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIE 232
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.187e-14 Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 1 Query: 568 RLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 R+ +PV +YP FNFVG+ILGP+GN++KR++ T ++ + G+GS++D KEE+L+ P Y HLN LHV +E Sbjct: 142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIE 215
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14 Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1 Query: 577 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783 +PV ++P FNFVG++LGPRGNSLKR++ T ++ I G+GS++D KEE+L+ + Y HLN+ LHVL+E Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIE 132 The following BLAST results are available for this feature:
BLAST of CK936844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CK936844 ID=CK936844; Name=CK936844; organism=Citrus sinensis; type=EST; length=793bpback to top |