CK936844

Overview
NameCK936844
Unique NameCK936844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  577 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIE 132          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1
Query:  577 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLK--DKPGYEHLNEPLHVLVE 783
            +PV ++P FNFVG++LGPRGNSLKR++  T  ++ I G+GS++D  KEE+L+   +  Y HLN+ LHVL+E
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIE 132          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: GRP33_ARTSA (Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 38/103 (36.89%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  472 HLQRMAPFQTPPSMGWQGIPGIPTTPVVKRVIRLDVPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPG--YEHLNEPLHV 774
            H++  +  +T P+    G   +     VK V R  +PVD++P +NF+G++LGP G+++K+++  T  ++ I GRGS++D  KEE+L++     Y HLNE LH+
Sbjct:   45 HIKTGSRPKTVPNTDGSGFMDLYNDTKVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHI 147          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: BBP_ASHGO (Branchpoint-bridging protein OS=Ashbya gossypii GN=BBP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  577 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKP-GYEHLNEPLHVLVEA 786
            +P++ YP  NFVG +LGPRGN+LK+++  + C++ IRGRGSVK+    +   D P G  ++NEPLH ++ A
Sbjct:  155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEG---KAATDLPKGAMNMNEPLHCVISA 222          
BLAST of CK936844 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  577 VPVDKYPNFNFVGRILGPRGNSLKRVEAMTECRVFIRGRGSVKDSIKEEKLKDKPGYEHLNEPLHVLVEA 786
            +PVD+YP+ NFVG +LGPRG +L++++  + C++ IRGRGSVK+      L   PG  +  +PLH L+ A
Sbjct:  154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIA 221          
The following BLAST results are available for this feature:
BLAST of CK936844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
KHDR3_MOUSE2.025e-1452.11KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_HUMAN2.025e-1452.11KH domain-containing, RNA-binding, signal transduc... [more]
GRP33_ARTSA2.239e-1336.89Glycine-rich protein GRP33 OS=Artemia salina PE=2 ... [more]
BBP_ASHGO5.514e-1246.48Branchpoint-bridging protein OS=Ashbya gossypii GN... [more]
BBP_YEAST1.604e-1145.71Branchpoint-bridging protein OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_D03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936844 ID=CK936844; Name=CK936844; organism=Citrus sinensis; type=EST; length=793bp
GCGGGGGAGGCANNNACAGGGACTCAAAACACGACACTACTCTTTCATCC
CCCATCTCCATCTCCATCTCCACCTCCACCTCCACCTCCACCGCCTCTCT
CTCCTTCCCATTCCGACCACCACCATCATCATAATCGAATGGGAGAGAGA
CTCACCCCTGGAAGTTACTTCCAGTACCCTCCTTCAGGAGTTCACGCTTC
TCCTCATAGGTCTTCTTCTTTGCCTTTAGATCGTGAAAGGTATTTGGCTG
AATTATTGGCAGAAAGGCAAAAGTTAGGACCATTTGTCCAAGTTTTGCCT
CTATGCAGCAGGCTTCTCAGTCAAGAAATCAGACGAATAACGGGTTACAA
TCCAAGTTTTGTTGATCATGAAAGGTTTGAGCATGATAGCCCATTTAGGT
CGTTAGGTCAGCCAAATGGAAGACCAATGGATTTGGAGGGTTTGTCTGCA
ATGCAAACTGAGGAAAATGGGCACCTTCAAAGAATGGCCCCTTTTCAAAC
TCCTCCTTCAATGGGCTGGCAAGGTATTCCTGGAATTCCAACCACACCTG
TTGTAAAGAGAGTTATTAGACTTGATGTTCCTGTGGATAAATATCCAAAT
TTTAATTTTGTCGGCCGGATTTTGGGACCGCGTGGGAACTCGCTCAAAAG
AGTCGAAGCCATGACAGAATGTAGGGTGTTCATTAGAGGCCGGGGTTCAG
TCAAGGATTCAATAAAGGAAGAAAAACTTAAAGATAAACCTGGATATGAG
CATCTTAATGAGCCACTGCACGTGTTAGTGGAGGCCGANTTTN
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