CK936842

Overview
NameCK936842
Unique NameCK936842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.096e-14
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +   D +  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            S D   R +VG LAW     +L   FS  G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            E + FVGGL + T + +L + FS++G I E  ++ DRET RSRGFGF+TF + +    A+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.626e-13
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF      +D    MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.699e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVT       +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            M  AD   + F+GGL   T + SL   F  YG I E  ++ DRET +SRGF F+TF      + A+  MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +SRGF FVTF    + + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
The following BLAST results are available for this feature:
BLAST of CK936842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RBM3_RAT3.096e-1447.44Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
ROC1_NICSY9.008e-1442.1729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL9.008e-1442.1730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM3_HUMAN1.177e-1347.44Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
HNRPG_PANTR2.621e-1344.05Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN2.621e-1344.05Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
HNRPG_RAT7.626e-1342.86Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
HNRPG_MOUSE1.699e-1242.86Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
HNRPG_BOVIN2.219e-1242.86Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
HNRGT_MACFA4.943e-1242.86RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_D01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936842 ID=CK936842; Name=CK936842; organism=Citrus sinensis; type=EST; length=743bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCACGGATA
CGGAGGAGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAG
GAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATG
TGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCTGTT
TGGTTAATTGTTTGAAAAAAAAAAAAAAAAAAAAAAAANNNAA
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