CK936842

Overview
NameCK936842
Unique NameCK936842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + F+GGL W TTD SL + F  +G++L+  ++ D  TGRSRGFGF+TF++ K + + +      +LDG+ I    A
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTD+SL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2
Query:   89 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNG-QNLDGRNI 313
            D   + FVGGL+W TT  +L   F  +GDI++  ++ + E+GRSRGFGFVTF D  ++   ++  NG   LDGR I
Sbjct:    4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTI 77          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 2
Query:   80 ASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 313
            A AD   + FVGGL W+TT  +L   FS YG++++  I+ D+ T +SRGFGFV F+D   +   +       LDGRNI
Sbjct:    4 AGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV-GTVLASRPHTLDGRNI 80          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: RBM38_XENLA (RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+T +SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK936842 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 313
            + F+GGL+W T+  SL + F  YGDI E+ ++ D  T RSRGFGFVTF D  S+ D +       LDG+ +
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV-DKVLTQGTHELDGKKV 99          
The following BLAST results are available for this feature:
BLAST of CK936842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RBM38_MOUSE2.453e-1147.37RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM24_DANRE2.453e-1147.37RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
YHKF_SCHPO4.185e-1140.79Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
RBM24_HUMAN4.185e-1146.05RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
RB27C_DROME5.465e-1144.74Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
DAZP1_MOUSE5.465e-1143.59DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]
RBM38_XENLA9.322e-1146.05RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 ... [more]
MSIR6_DROME9.322e-1145.07RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_D01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936842 ID=CK936842; Name=CK936842; organism=Citrus sinensis; type=EST; length=743bp
GGGGATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCACGGATA
CGGAGGAGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAG
GAGTTGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATG
TGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCTGTT
TGGTTAATTGTTTGAAAAAAAAAAAAAAAAAAAAAAAANNNAA
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