CK936841

Overview
NameCK936841
Unique NameCK936841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_LEIAL (Cytochrome b OS=Leiopython albertisii GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 36/122 (29.51%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  364 VPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWA 729
            V  +++ ++    + LTC  +QV TGF +  +Y   +  AF+S+ +I  +V FGW+++++H   ASM  +   +H+ R    G +      TW++G+ L +   +    GY LP  Q+ +WA
Sbjct:   15 VATNISTWWNFGSMLLTCLALQVLTGFFLAVHYTANINLAFSSIIHITRDVPFGWMMQNLHAIGASMFFICIYIHIARGLYYGSYLNKE--TWMSGITLLITLMATAFFGYVLPWGQMSFWA 134          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_KUNTO (Cytochrome b OS=Kunsia tomentosus GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 40/120 (33.33%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  +  +Y    T AF+SV +I  +VN+GWLIR +H   ASM  +   +HV R    G +   RE TW  G++L   T +    GY LP  Q+ +W
Sbjct:   24 PSNISSWWNFGSLLGICLMIQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYLHANGASMFFICLFIHVGRGIYYGSYTL-RE-TWNIGILLLFTTMATAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_GYMRO (Cytochrome b OS=Gymnuromys roberti GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ATG  +  +Y    T AF+SV +I  +VN+GWLIR +H   ASM  +   +HV R    G +      TW  G++L     +    GY LP  Q+ +W
Sbjct:   24 PSNISSWWNFGSLLGMCLIIQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFIHVGRGIYYGSYTFTE--TWNIGIILLFTVMATAFMGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_ELIMI (Cytochrome b OS=Eliurus minor GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ATG  +  +Y    T AF+SV +I  +VN+GWLIR +H   ASM  +   +HV R    G +      TW  G++L     +    GY LP  Q+ +W
Sbjct:   24 PSNISSWWNFGSLLGICLILQIATGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFIHVGRGMYYGSYMSME--TWNMGIILLFAVMATAFMGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_DIPIN (Cytochrome b OS=Dipodomys ingens GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+A+G  +  +Y P    AF+SV +I  +VN+GWLIR +H   AS+  +   LH  R    G +      TW  G++L  LT +    GY LP  Q+ +W
Sbjct:   24 PSNISGWWNFGSLLGVCLVIQIASGLFLAMHYTPDTLTAFSSVTHICRDVNYGWLIRYMHANGASLFFICLYLHXGRGIYYGSYSYME--TWNIGIILLFLTMATAFMGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_DASSP (Cytochrome b OS=Dasyurus spartacus GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 37/120 (30.83%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  +  +Y      AF+SV +I  +VN+GWL+R++H   ASM  +   LHV R    G +      TW  GV+L +   +    GY LP  Q+ +W
Sbjct:   24 PSNISAWWNFGSLLGVCLIIQILTGLFLAMHYTSDTLTAFSSVAHICRDVNYGWLLRNLHANGASMFFMCLFLHVGRGIYYGSYLYKE--TWNIGVILLLTVMAMAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_DACTR (Cytochrome b OS=Dactylopsila trivirgata GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  ++ +Y      AF+SV +I  +VN+GWLIR++H   ASM  +   LHV R    G +      TW  GV+L +   +    GY LP  Q+ +W
Sbjct:   24 PSNISAWWNFGSLLGVCLIIQILTGLFLSMHYTSDTLTAFSSVVHICRDVNYGWLIRNLHANGASMFFMCLFLHVGRGIYYGSYLYKE--TWNIGVILLLTVMATAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_CHODI (Cytochrome b OS=Choloepus didactylus GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  +  +Y P  T AF+SV +I  +VN+GW+IR +H   ASM  +   LH+ R    G +   +  TW  G++L     +    GY LP  Q+ +W
Sbjct:   24 PSNISTWWNFGSLLGMCLIMQILTGLFLAMHYTPDTTTAFSSVTHICRDVNYGWIIRYLHTNGASMFFICLYLHIGRSMYYGSYTYLK--TWNIGIMLLFTVMATAFMGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_CHAFL (Cytochrome b OS=Chaetodipus fallax GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+A+G  +  +Y      AF+SV +I  +VN+GWLIR +H   AS+  +   LH+ R    G +      TW  G+VL  LT +    GY LP  Q+ +W
Sbjct:   24 PSNISGWWNFGSLLGMCLIIQIASGLFLAMHYTSDTISAFSSVAHICRDVNYGWLIRYIHANGASLFFICLYLHIGRGIYYGSYMYKE--TWNIGIVLLFLTMATAFMGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_CHAAI (Cytochrome b OS=Channa asiatica GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 39/128 (30.47%), Postives = 63/128 (49.22%), Query Frame = 1
Query:  343 DDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            D +     P  ++ ++    +   C + Q+ TG  +  +Y   +T AF+SV +I  +VN+GWLIR++H   AS   +   LH+ R    G +      TW  GV+L +L       GY LP  Q+ +W
Sbjct:   16 DALVDLPTPTSISAWWNFGSLLGLCLVAQIITGLFLAMHYTADITTAFSSVAHICRDVNYGWLIRNLHANGASFFFICVYLHIGRGLYYGSYLYKE--TWNIGVILLLLVMMTAFVGYVLPWGQMSFW 141          
The following BLAST results are available for this feature:
BLAST of CK936841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB_LEIAL3.952e-1429.51Cytochrome b OS=Leiopython albertisii GN=MT-CYB PE... [more]
CYB_KUNTO3.952e-1433.33Cytochrome b OS=Kunsia tomentosus GN=MT-CYB PE=3 S... [more]
CYB_GYMRO3.952e-1431.67Cytochrome b OS=Gymnuromys roberti GN=MT-CYB PE=3 ... [more]
CYB_ELIMI3.952e-1431.67Cytochrome b OS=Eliurus minor GN=MT-CYB PE=3 SV=1[more]
CYB_DIPIN3.952e-1431.67Cytochrome b OS=Dipodomys ingens GN=MT-CYB PE=3 SV... [more]
CYB_DASSP3.952e-1430.83Cytochrome b OS=Dasyurus spartacus GN=MT-CYB PE=3 ... [more]
CYB_DACTR3.952e-1431.67Cytochrome b OS=Dactylopsila trivirgata GN=MT-CYB ... [more]
CYB_CHODI3.952e-1430.83Cytochrome b OS=Choloepus didactylus GN=MT-CYB PE=... [more]
CYB_CHAFL3.952e-1431.67Cytochrome b OS=Chaetodipus fallax GN=MT-CYB PE=3 ... [more]
CYB_CHAAI3.952e-1430.47Cytochrome b OS=Channa asiatica GN=mt-cyb PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936841 ID=CK936841; Name=CK936841; organism=Citrus sinensis; type=EST; length=732bp
AAATAACAAATCAAAGAAAATGAAATAGGTAAATAGAAGATTCAAGAGGC
CTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATTTTTTGGCATT
CTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTCTTTCGTATTT
TTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATTTTCTATTCCA
TACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATGAAATTCTCAT
ATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCTCAATAAAGTC
TACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTGCAGATGATAT
AACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTGNNNG
GAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGGGTTTGCTATG
ACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCTCTGTTCAATA
CATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCGGTTCATCGAT
GGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGTATTTCGCGTG
TATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTTGGGTTACAGG
TGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTT
TACCTTGCGACCAAATTGGATATTGGGCAGTA
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