CK936841

Overview
NameCK936841
Unique NameCK936841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SYNBO (Cytochrome b OS=Synaptomys borealis GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  +  +Y    T AF+SV +I  +VN+GWLIR +H   ASM  +   LHV R    G +      TW  G+VL     +    GY LP  Q+ +W
Sbjct:   24 PSNISSWWNFGSLLGLCLMIQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGVYYGSYNMIE--TWNMGIVLLFAVMATAFMGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SMIMA (Cytochrome b OS=Sminthopsis macroura GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  +  +Y      AF+SV +I  +VN+GWLIR++H   ASM  +   LHV R    G +      TW  GV+L +   +    GY LP  Q+ +W
Sbjct:   24 PSNISAWWNFGSLLGICLMIQILTGLFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHVGRGIYYGSYLYKE--TWNIGVILLLTVMATAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SMILO (Cytochrome b OS=Sminthopsis longicaudata GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  +  +Y      AF+SV +I  +VN+GWLIR++H   ASM  +   LHV R    G +      TW  GV+L +   +    GY LP  Q+ +W
Sbjct:   24 PSNISAWWNFGSLLGICLMIQILTGLFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHVGRGIYYGSYLYKE--TWNIGVILLLTVMATAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SMIAR (Cytochrome b OS=Sminthopsis archeri GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  +  +Y      AF+SV +I  +VN+GWLIR++H   ASM  +   LHV R    G +      TW  GV+L +   +    GY LP  Q+ +W
Sbjct:   24 PSNISAWWNFGSLLGVCLVIQILTGLFLAMHYTSDTLTAFSSVAHICRDVNYGWLIRNLHANGASMFFMCLFLHVGRGIYYGSYLYKE--TWNIGVILLLTVMATAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SCOJU (Cytochrome b OS=Scolomys juruaense GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 38/120 (31.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++    +   C ++Q+ TG  +  +Y    T AF+SV +I  +VN+GWLIR +H   ASM  +   +HV R    G        TW  G++L + T +    GY LP  Q+ +W
Sbjct:   24 PSNISSWWNFGSLLGICLMIQIITGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYIHANGASMFFICLFIHVGRGIYYGXXMLNE--TWNIGIILFLTTMATAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SALTR (Cytochrome b OS=Salmo trutta GN=mt-cyb PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  343 DDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            D +     P ++++++    +   C   Q+ TG  +  +Y   ++ AF+SV +I  +V++GWLIR++H   AS   +   +H+ R    G +      TW  GVVL +LT      GY LP  Q+ +W
Sbjct:   16 DALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGLYYGSYLYKE--TWNIGVVLLLLTMMTAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SALSA (Cytochrome b OS=Salmo salar GN=mt-cyb PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  343 DDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            D +     P ++++++    +   C   Q+ TG  +  +Y   ++ AF+SV +I  +V++GWLIR++H   AS   +   +H+ R    G +      TW  GVVL +LT      GY LP  Q+ +W
Sbjct:   16 DALVDLPAPSNISVWWNFGSLLGLCLATQILTGLFLAMHYTSDISTAFSSVCHICRDVSYGWLIRNIHANGASFFFICIYMHIARGLYYGSYLYKE--TWNIGVVLLLLTMMTAFVGYVLPWGQMSFW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SAISC (Cytochrome b OS=Saimiri sciureus GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++ L  +   C ++Q+ TG  +  +Y P    AF+SV +I  +VN GW IR +H   ASM      LH+ R    G F   RE TW  G +L + T +    GY LP  Q+  W
Sbjct:   24 PSNISFWWNLGSLLGACLIIQITTGLFLAMHYTPDTQTAFSSVAHITRDVNHGWTIRYMHANGASMFFTCLFLHIGRGLYYGSFLS-RE-TWNIGTILLLTTMATAFMGYVLPWGQMSLW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_SAIBB (Cytochrome b OS=Saimiri boliviensis boliviensis GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 41/120 (34.17%), Postives = 61/120 (50.83%), Query Frame = 1
Query:  367 PPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            P +++ ++ L  +   C ++Q+ TG  +  +Y P    AF+SV +I  +VN GW IR +H   ASM      LH+ R    G F   RE TW  G +L + T +    GY LP  Q+  W
Sbjct:   24 PSNISFWWNLGSLLGACLIIQITTGLFLAMHYTPDTQTAFSSVAHITRDVNHGWTIRYMHANGASMFFTCLFLHIGRGLYYGSFLS-RE-TWNIGTILLLTTMATAFMGYVLPWGQMSLW 141          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB_PROPA (Cytochrome b OS=Procellaria parkinsoni GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.162e-14
Identity = 38/133 (28.57%), Postives = 66/133 (49.62%), Query Frame = 1
Query:  328 IQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYW 726
            ++ I + +     PP+++ ++    +   C + Q+ TG  +  +Y    T AF+SV +    V +GWLIR++H   AS   +   LH+ R +  G +      TW TGV+L +   +    GY LP  Q+ +W
Sbjct:   12 LKMINNSLIDLPTPPNISAWWNFGSLLGICLMTQILTGLLLAMHYTADTTLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFW 142          
The following BLAST results are available for this feature:
BLAST of CK936841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB_SYNBO5.162e-1432.50Cytochrome b OS=Synaptomys borealis GN=MT-CYB PE=3... [more]
CYB_SMIMA5.162e-1431.67Cytochrome b OS=Sminthopsis macroura GN=MT-CYB PE=... [more]
CYB_SMILO5.162e-1431.67Cytochrome b OS=Sminthopsis longicaudata GN=MT-CYB... [more]
CYB_SMIAR5.162e-1431.67Cytochrome b OS=Sminthopsis archeri GN=MT-CYB PE=3... [more]
CYB_SCOJU5.162e-1431.67Cytochrome b OS=Scolomys juruaense GN=MT-CYB PE=3 ... [more]
CYB_SALTR5.162e-1429.69Cytochrome b OS=Salmo trutta GN=mt-cyb PE=3 SV=3[more]
CYB_SALSA5.162e-1429.69Cytochrome b OS=Salmo salar GN=mt-cyb PE=3 SV=1[more]
CYB_SAISC5.162e-1434.17Cytochrome b OS=Saimiri sciureus GN=MT-CYB PE=3 SV... [more]
CYB_SAIBB5.162e-1434.17Cytochrome b OS=Saimiri boliviensis boliviensis GN... [more]
CYB_PROPA5.162e-1428.57Cytochrome b OS=Procellaria parkinsoni GN=MT-CYB P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936841 ID=CK936841; Name=CK936841; organism=Citrus sinensis; type=EST; length=732bp
AAATAACAAATCAAAGAAAATGAAATAGGTAAATAGAAGATTCAAGAGGC
CTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATTTTTTGGCATT
CTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTCTTTCGTATTT
TTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATTTTCTATTCCA
TACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATGAAATTCTCAT
ATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCTCAATAAAGTC
TACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTGCAGATGATAT
AACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTGNNNG
GAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGGGTTTGCTATG
ACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCTCTGTTCAATA
CATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCGGTTCATCGAT
GGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGTATTTCGCGTG
TATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTTGGGTTACAGG
TGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTT
TACCTTGCGACCAAATTGGATATTGGGCAGTA
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