CK936841

Overview
NameCK936841
Unique NameCK936841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_GRATL (Cytochrome b6 OS=Gracilaria tenuistipitata var. liui GN=petB PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.798e-74
Identity = 129/148 (87.16%), Postives = 139/148 (93.92%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            + KVYDWFEERLEIQAIADDITSKYVPPHVNIFYC+ GI  T FL+QVA+GFAMTFYYRPTV EAF+SV+YIMT+VNFGWLIRS+HRWSASMMVLM ILH+FRVYLTGGFKKPRELTWVTGV+LAVLT SFGVTGYSLP DQIGYWAV
Sbjct:    1 MGKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCIGGIVFTSFLIQVASGFAMTFYYRPTVAEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_NOSSP (Cytochrome b6 OS=Nostoc sp. (strain PCC 7906) GN=petB PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.572e-74
Identity = 127/145 (87.59%), Postives = 138/145 (95.17%), Query Frame = 1
Query:  298 VYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            VYDWFEERLEIQAIA+D+TSKYVPPHVNIFYCL GITLTCFL+Q ATGFAMTFYY+PTV EAF+SV+YIM EVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTWV+GV+LAV+T SFGVTGYSLP DQ+GYWAV
Sbjct:    4 VYDWFEERLEIQAIAEDVTSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVAEAFSSVEYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVSGVILAVITVSFGVTGYSLPWDQVGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_MESVI (Cytochrome b6 OS=Mesostigma viride GN=petB PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.572e-74
Identity = 127/148 (85.81%), Postives = 139/148 (93.92%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWF +RLEIQ IADDITSKYVPPHVNIFYC+ GIT TCF++QVA+GFAMTFYYRPTVTEAFASVQYIMT+VNFGWLIRS+H+WSASMMVL  ILHVFRVYLTGGFKKPRELTWVTGV+LAV T SFGVTGYSLP DQ+GYWAV
Sbjct:    1 MSKVYDWFNDRLEIQGIADDITSKYVPPHVNIFYCIGGITFTCFIMQVASGFAMTFYYRPTVTEAFASVQYIMTDVNFGWLIRSIHKWSASMMVLTMILHVFRVYLTGGFKKPRELTWVTGVILAVCTVSFGVTGYSLPWDQVGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_EMIHU (Cytochrome b6 OS=Emiliania huxleyi GN=petB PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.572e-74
Identity = 130/147 (88.44%), Postives = 139/147 (94.56%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWA 729
            ++ VYDWF+ERLEIQAIADDITSKYVPPHVNIFYCL GITLTCF+VQVATGFAMTFYYRPTVTEAFASV+Y+MTEVNFGWLIRSVHRWSASMMVL  ILHV RVYLTGGFKKPRELTWVTGV+LA +T SFGVTGYSLP DQ+GYWA
Sbjct:    1 MSSVYDWFQERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFIVQVATGFAMTFYYRPTVTEAFASVEYLMTEVNFGWLIRSVHRWSASMMVLNMILHVCRVYLTGGFKKPRELTWVTGVLLASVTVSFGVTGYSLPWDQVGYWA 147          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_CYAA5 (Cytochrome b6 OS=Cyanothece sp. (strain ATCC 51142) GN=petB PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.889e-74
Identity = 128/147 (87.07%), Postives = 138/147 (93.88%), Query Frame = 1
Query:  292 NKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            +KVY WF +RLEIQAI+DDITSKYVPPHVNIFYCL GITL CFLVQ ATGFAMTFYY+PTVTEAF+SVQYIM EVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+TGV+LAV+T SFGVTGYSLP DQ+GYWAV
Sbjct:    9 SKVYQWFNDRLEIQAISDDITSKYVPPHVNIFYCLGGITLVCFLVQFATGFAMTFYYKPTVTEAFSSVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWMTGVILAVITVSFGVTGYSLPWDQVGYWAV 155          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_CYAME (Cytochrome b6 OS=Cyanidioschyzon merolae GN=petB PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.292e-73
Identity = 126/147 (85.71%), Postives = 139/147 (94.56%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWA 729
            ++KVYDWF+ERL IQ IADDITSKYVPPHVNIFYCL G+TLTCFLVQVATGFAMTFYYRPTV EAF+SV+Y+MT+VNFGWLIRS+HRWSASMMVLM ILH+FRVYLTGGFKKPRELTW+TGV+L VLT SFGVTGYSLP DQ+GYWA
Sbjct:    1 MSKVYDWFQERLSIQDIADDITSKYVPPHVNIFYCLGGMTLTCFLVQVATGFAMTFYYRPTVAEAFSSVEYMMTQVNFGWLIRSLHRWSASMMVLMMILHIFRVYLTGGFKKPRELTWITGVILGVLTVSFGVTGYSLPWDQVGYWA 147          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_PORPU (Cytochrome b6 OS=Porphyra purpurea GN=petB PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.203e-73
Identity = 128/148 (86.49%), Postives = 137/148 (92.57%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++K+YDWFEERLEIQAIADDI+SKYVPPHVNIFYCL GI    FL+QVATGFAMTFYYRPTV EAF SV+YIMT+VNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+L VLT SFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKIYDWFEERLEIQAIADDISSKYVPPHVNIFYCLGGIVFVSFLIQVATGFAMTFYYRPTVAEAFTSVEYIMTDVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILGVLTVSFGVTGYSLPWDQIGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_OLTVI (Cytochrome b6 OS=Oltmannsiellopsis viridis GN=petB PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.203e-73
Identity = 126/148 (85.14%), Postives = 140/148 (94.59%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVY+WF+ERLE+QAIADD++SKYVPPHVNIFYCL GIT T FLVQVATGFAMTFYYRPTV EAFASVQYIMT+VNFGWLIRS+HRWSASMMV+M ILHVFRVYLTGGFK+PRELTWVTGV++AV T SFGVTGYSLP DQ+GYWAV
Sbjct:    1 MSKVYEWFDERLELQAIADDVSSKYVPPHVNIFYCLGGITFTSFLVQVATGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVMMMILHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_CYAP7 (Cytochrome b6 OS=Cyanothece sp. (strain PCC 7424) GN=petB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.877e-73
Identity = 126/147 (85.71%), Postives = 136/147 (92.52%), Query Frame = 1
Query:  292 NKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            +KVY WFEERLE+Q IADDITSKYVPPHVNIFYCL GITL CFL+Q ATGFAMTFYY+PTVTEAF SV+YIM EVNFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+ GV++AV+T SFGVTGYSLP DQ+GYWAV
Sbjct:    9 SKVYQWFEERLEVQEIADDITSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVTEAFTSVEYIMNEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWIVGVIMAVITVSFGVTGYSLPWDQVGYWAV 155          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_ANAVT (Cytochrome b6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.877e-73
Identity = 126/145 (86.90%), Postives = 137/145 (94.48%), Query Frame = 1
Query:  298 VYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            VYDWFEERLEIQAIA+D+TSKYVPPHVNIFYCL GITL CFL+Q ATGFAMTFYY+PTV EA++SVQYIM EVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTWV+GV+LAV+T SFGVTGYSLP DQ+GYWAV
Sbjct:    4 VYDWFEERLEIQAIAEDVTSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVSGVILAVITVSFGVTGYSLPWDQVGYWAV 148          
The following BLAST results are available for this feature:
BLAST of CK936841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_GRATL5.798e-7487.16Cytochrome b6 OS=Gracilaria tenuistipitata var. li... [more]
CYB6_NOSSP7.572e-7487.59Cytochrome b6 OS=Nostoc sp. (strain PCC 7906) GN=p... [more]
CYB6_MESVI7.572e-7485.81Cytochrome b6 OS=Mesostigma viride GN=petB PE=3 SV... [more]
CYB6_EMIHU7.572e-7488.44Cytochrome b6 OS=Emiliania huxleyi GN=petB PE=3 SV... [more]
CYB6_CYAA59.889e-7487.07Cytochrome b6 OS=Cyanothece sp. (strain ATCC 51142... [more]
CYB6_CYAME1.292e-7385.71Cytochrome b6 OS=Cyanidioschyzon merolae GN=petB P... [more]
CYB6_PORPU2.203e-7386.49Cytochrome b6 OS=Porphyra purpurea GN=petB PE=3 SV... [more]
CYB6_OLTVI2.203e-7385.14Cytochrome b6 OS=Oltmannsiellopsis viridis GN=petB... [more]
CYB6_CYAP72.877e-7385.71Cytochrome b6 OS=Cyanothece sp. (strain PCC 7424) ... [more]
CYB6_ANAVT2.877e-7386.90Cytochrome b6 OS=Anabaena variabilis (strain ATCC ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936841 ID=CK936841; Name=CK936841; organism=Citrus sinensis; type=EST; length=732bp
AAATAACAAATCAAAGAAAATGAAATAGGTAAATAGAAGATTCAAGAGGC
CTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATTTTTTGGCATT
CTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTCTTTCGTATTT
TTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATTTTCTATTCCA
TACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATGAAATTCTCAT
ATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCTCAATAAAGTC
TACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTGCAGATGATAT
AACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTGNNNG
GAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGGGTTTGCTATG
ACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCTCTGTTCAATA
CATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCGGTTCATCGAT
GGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGTATTTCGCGTG
TATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTTGGGTTACAGG
TGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTT
TACCTTGCGACCAAATTGGATATTGGGCAGTA
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