CK936841

Overview
NameCK936841
Unique NameCK936841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_ANASP (Cytochrome b6 OS=Anabaena sp. (strain PCC 7120) GN=petB PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.877e-73
Identity = 126/145 (86.90%), Postives = 137/145 (94.48%), Query Frame = 1
Query:  298 VYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            VYDWFEERLEIQAIA+D+TSKYVPPHVNIFYCL GITL CFL+Q ATGFAMTFYY+PTV EA++SVQYIM EVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTWV+GV+LAV+T SFGVTGYSLP DQ+GYWAV
Sbjct:    4 VYDWFEERLEIQAIAEDVTSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVSGVILAVITVSFGVTGYSLPWDQVGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_SYNP6 (Cytochrome b6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petB PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.758e-73
Identity = 124/148 (83.78%), Postives = 141/148 (95.27%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIA+D++SKYVPPHVNIFYCL GITLTCFL+Q ATGFAMTFYY+PTV EA++SVQ+IM +VNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFK+PRELTWVTGVV+AV+T +FGVTGYSLP DQ+GYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIAEDVSSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVAEAYSSVQFIMNQVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKRPRELTWVTGVVMAVITVTFGVTGYSLPWDQVGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_SYNE7 (Cytochrome b6 OS=Synechococcus elongatus (strain PCC 7942) GN=petB PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.758e-73
Identity = 124/148 (83.78%), Postives = 141/148 (95.27%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++KVYDWFEERLEIQAIA+D++SKYVPPHVNIFYCL GITLTCFL+Q ATGFAMTFYY+PTV EA++SVQ+IM +VNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFK+PRELTWVTGVV+AV+T +FGVTGYSLP DQ+GYWAV
Sbjct:    1 MSKVYDWFEERLEIQAIAEDVSSKYVPPHVNIFYCLGGITLTCFLIQFATGFAMTFYYKPTVAEAYSSVQFIMNQVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKRPRELTWVTGVVMAVITVTFGVTGYSLPWDQVGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_PHATR (Cytochrome b6 OS=Phaeodactylum tricornutum GN=petB PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.758e-73
Identity = 124/147 (84.35%), Postives = 138/147 (93.88%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWA 729
            +NKVYDWFEERLE+QAIADDI+SKYVPPHVNIFYC  G+ LTCFL+QVATGFAMTFYYRP+V +AFASV+YIMT VNFGWLIRS+HRWSASMMVLM +LHVFRVYLTGGFKKPRELTWVTGV L+V+T SFGVTGYSLP DQ+G+WA
Sbjct:    1 MNKVYDWFEERLEVQAIADDISSKYVPPHVNIFYCFGGLVLTCFLIQVATGFAMTFYYRPSVVDAFASVEYIMTSVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGGFKKPRELTWVTGVTLSVVTVSFGVTGYSLPWDQVGFWA 147          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_PORYE (Cytochrome b6 OS=Porphyra yezoensis GN=petB PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.410e-73
Identity = 127/148 (85.81%), Postives = 136/148 (91.89%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            ++K+YDWFEERLEIQAIADDI+SKYVPPHVNIFYCL GI    FL+QVATGFAMTFYYRPTV EAF SV+YIMT+VNFGWLIRS+HRWS SMMVLM ILHVFRVYLTGGFKKPRELTWVTGV+L VLT SFGVTGYSLP DQIGYWAV
Sbjct:    1 MSKIYDWFEERLEIQAIADDISSKYVPPHVNIFYCLGGIVFVSFLIQVATGFAMTFYYRPTVAEAFTSVEYIMTDVNFGWLIRSIHRWSVSMMVLMMILHVFRVYLTGGFKKPRELTWVTGVILGVLTVSFGVTGYSLPWDQIGYWAV 148          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_ODOSI (Cytochrome b6 OS=Odontella sinensis GN=petB PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.410e-73
Identity = 125/147 (85.03%), Postives = 137/147 (93.20%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWA 729
            + KVYDWFEERLEIQAIADDI+SKYVPPHVNIFYC  GI  TCFLVQVATGFAMTFYYRP+V +AFASV+YIMT VNFGWLIRS+HRWSASMMV+M +LHVFRVYLTGGFKKPRELTWVTGV+LAV+T SFGVTGYSLP DQ+G+WA
Sbjct:    1 MGKVYDWFEERLEIQAIADDISSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSVVDAFASVEYIMTSVNFGWLIRSIHRWSASMMVMMMVLHVFRVYLTGGFKKPRELTWVTGVILAVVTVSFGVTGYSLPWDQVGFWA 147          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_THAPS (Cytochrome b6 OS=Thalassiosira pseudonana GN=petB PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.372e-73
Identity = 124/147 (84.35%), Postives = 137/147 (93.20%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWA 729
            + KVYDWFEERLE+QAIADDI+SKYVPPHVNIFYC  GI  TCFLVQVATGFAMTFYYRP+V +AFASV+YIMT VNFGWLIRS+HRWSASMMV+M +LHVFRVYLTGGFKKPRELTWVTGV+LAV+T SFGVTGYSLP DQ+G+WA
Sbjct:    1 MGKVYDWFEERLEVQAIADDISSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSVVDAFASVEYIMTSVNFGWLIRSIHRWSASMMVMMLVLHVFRVYLTGGFKKPRELTWVTGVILAVVTVSFGVTGYSLPWDQVGFWA 147          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_SKECO (Cytochrome b6 OS=Skeletonema costatum GN=petB PE=3 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.372e-73
Identity = 124/147 (84.35%), Postives = 137/147 (93.20%), Query Frame = 1
Query:  289 LNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWA 729
            + KVYDWFEERLE+QAIADDI+SKYVPPHVNIFYC  GI  TCFLVQVATGFAMTFYYRP+V +AFASV+YIMT VNFGWLIRS+HRWSASMMV+M +LHVFRVYLTGGFKKPRELTWVTGV+LAV+T SFGVTGYSLP DQ+G+WA
Sbjct:    1 MGKVYDWFEERLEVQAIADDISSKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSVVDAFASVEYIMTSVNFGWLIRSIHRWSASMMVMMLVLHVFRVYLTGGFKKPRELTWVTGVILAVVTVSFGVTGYSLPWDQVGFWA 147          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_TRIEI (Cytochrome b6 OS=Trichodesmium erythraeum (strain IMS101) GN=petB PE=3 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.428e-72
Identity = 126/144 (87.50%), Postives = 135/144 (93.75%), Query Frame = 1
Query:  301 YDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            Y WF+ERLE+QA+ADDI+SKYVPPHVNIFYCL GITL CFL+Q ATGFAMTFYY+PTVTEA ASVQYIMTEVNFGWLIRS+HRWSASMMVLM ILH FRVYLTGGFKKPRELTWVTGVV+AV+T SFGVTGYSLP DQIGYWAV
Sbjct:   12 YKWFDERLEVQALADDISSKYVPPHVNIFYCLGGITLVCFLIQFATGFAMTFYYKPTVTEALASVQYIMTEVNFGWLIRSIHRWSASMMVLMMILHTFRVYLTGGFKKPRELTWVTGVVMAVITVSFGVTGYSLPWDQIGYWAV 155          
BLAST of CK936841 vs. ExPASy Swiss-Prot
Match: CYB6_CYAP8 (Cytochrome b6 OS=Cyanothece sp. (strain PCC 8801) GN=petB PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.865e-72
Identity = 124/145 (85.52%), Postives = 136/145 (93.79%), Query Frame = 1
Query:  298 VYDWFEERLEIQAIADDITSKYVPPHVNIFYCLXGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPCDQIGYWAV 732
            +Y WF+ RLEIQAI+DDITSKYVPPHVNIFYCL GITL CF++Q ATGFAMTFYY+PTVT+AFASVQYIM EVNFGWLIRS+HRWSASMMVLM ILHVFRVYLTGGFKKPRELTW+TGV+LAV+T SFGVTGYSLP DQ+GYWAV
Sbjct:   11 IYKWFDNRLEIQAISDDITSKYVPPHVNIFYCLGGITLVCFIIQFATGFAMTFYYKPTVTDAFASVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWMTGVILAVITVSFGVTGYSLPWDQVGYWAV 155          
The following BLAST results are available for this feature:
BLAST of CK936841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_ANASP2.877e-7386.90Cytochrome b6 OS=Anabaena sp. (strain PCC 7120) GN... [more]
CYB6_SYNP63.758e-7383.78Cytochrome b6 OS=Synechococcus sp. (strain ATCC 27... [more]
CYB6_SYNE73.758e-7383.78Cytochrome b6 OS=Synechococcus elongatus (strain P... [more]
CYB6_PHATR3.758e-7384.35Cytochrome b6 OS=Phaeodactylum tricornutum GN=petB... [more]
CYB6_PORYE6.410e-7385.81Cytochrome b6 OS=Porphyra yezoensis GN=petB PE=3 S... [more]
CYB6_ODOSI6.410e-7385.03Cytochrome b6 OS=Odontella sinensis GN=petB PE=3 S... [more]
CYB6_THAPS8.372e-7384.35Cytochrome b6 OS=Thalassiosira pseudonana GN=petB ... [more]
CYB6_SKECO8.372e-7384.35Cytochrome b6 OS=Skeletonema costatum GN=petB PE=3... [more]
CYB6_TRIEI1.428e-7287.50Cytochrome b6 OS=Trichodesmium erythraeum (strain ... [more]
CYB6_CYAP81.865e-7285.52Cytochrome b6 OS=Cyanothece sp. (strain PCC 8801) ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_C12 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936841 ID=CK936841; Name=CK936841; organism=Citrus sinensis; type=EST; length=732bp
AAATAACAAATCAAAGAAAATGAAATAGGTAAATAGAAGATTCAAGAGGC
CTGTAACGATCAACATAAAGATAAGCGCGTCGACTTGATTTTTTGGCATT
CTAATTATAACCACAAAGAAAAGCTTTCTTATTTTTATTCTTTCGTATTT
TTAGATAAGATTGAATCAAAAAATTAAGAAGTTTCCAATTTTCTATTCCA
TACCAGTATTGGGGTGGTTTTGTTTGAGCCGTACGAGATGAAATTCTCAT
ATACGGTTCTCAGAGGGGAGTTCTCTTGGTTTACCTATCTCAATAAAGTC
TACGATTGGTTCGAAGAACGTCTCGAGATTCAGGCGATTGCAGATGATAT
AACTAGTAAATACGTTCCTCCTCATGTCAACATATTTTATTGTCTGNNNG
GAATTACGCTCACTTGTTTTTTAGTACAAGTAGCTACAGGGTTTGCTATG
ACTTTTTACTACCGCCCGACCGTTACTGAGGCTTTTGCCTCTGTTCAATA
CATAATGACGGAAGTTAACTTCGGGTGGTTAATTCGATCGGTTCATCGAT
GGTCGGCAAGTATGATGGTCCTAATGACAATCCTGCACGTATTTCGCGTG
TATCTCACCGGGGGTTTTAAAAAACCTCGCGAATTGACTTGGGTTACAGG
TGTGGTTCTGGCTGTATTGACCGCATCTTTTGGTGTAACAGGTTATTCTT
TACCTTGCGACCAAATTGGATATTGGGCAGTA
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