CK936838

Overview
NameCK936838
Unique NameCK936838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.373e-17
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAEL 110          

HSP 2 Score: 30.8018 bits (68), Expect = 7.373e-17
Identity = 22/79 (27.85%), Postives = 36/79 (45.57%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:  113 LLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.246e-16
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAEL 110          

HSP 2 Score: 30.8018 bits (68), Expect = 1.246e-16
Identity = 22/79 (27.85%), Postives = 36/79 (45.57%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:  113 LLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL8A_MOUSE (ADP-ribosylation factor-like protein 8A OS=Mus musculus GN=Arl8a PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 38/108 (35.19%), Postives = 67/108 (62.04%), Query Frame = 3
Query:   78 FTKL---FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH 389
            F KL   F  LF K+EM + +VGL  +GKTT +  +  G+     IPT+GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D++++  +++ELH
Sbjct:    5 FNKLLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELH 112          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.557e-16
Identity = 36/92 (39.13%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LWR YF    G++++VD  D +R+ E++ EL
Sbjct:   19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAEL 110          

HSP 2 Score: 27.7202 bits (60), Expect = 3.557e-16
Identity = 21/80 (26.25%), Postives = 33/80 (41.25%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     L+  NK D P A++  E+   LGL+             +R    ++ S     G G  EG  WL+  +
Sbjct:  113 LLAMEELARVPFLILGNKIDAPGAISEDELKAALGLYQTTGKGVSKPVPGIRPIEVFMCSVVLRQGYG--EGFKWLAQYV 190          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.621e-16
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            +K+ +IL +GLD AGKTT+L+ LK   +V   PT     E +   NI F  +D+GG    R +WR Y+     ++++VD+NDR+R  EA+ EL
Sbjct:   18 QKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKEL 110          

HSP 2 Score: 26.9498 bits (58), Expect = 4.621e-16
Identity = 12/36 (33.33%), Postives = 21/36 (58.33%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 499
            +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:  113 LLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGL 148          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.623e-16
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   +I FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL
Sbjct:   22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVEL 113          

HSP 2 Score: 27.335 bits (59), Expect = 4.623e-16
Identity = 19/70 (27.14%), Postives = 28/70 (40.00%), Query Frame = 2
Query:  407 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            EL+    ++  NK D P+A++  E+   LGL +         QR   +         G  E   WLS  I
Sbjct:  121 ELKTVPFVILGNKIDAPSAVSETELRAALGLLNTTGDARIEGQRPVELFMCSVVMKSGYLEAFQWLSQYI 190          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.811e-16
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL
Sbjct:   22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIEL 113          

HSP 2 Score: 25.409 bits (54), Expect = 7.811e-16
Identity = 20/70 (28.57%), Postives = 27/70 (38.57%), Query Frame = 2
Query:  407 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            EL +    V  NK D P+A++  E+   LGL +         QR   +         G  E   WLS  I
Sbjct:  121 ELDNVPFAVLGNKIDSPSAVSETELRAALGLMNTTGYTKIEGQRPIELFMCSVVMKSGYSEAFKWLSEYI 190          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.016e-15
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +   E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAEL 110          

HSP 2 Score: 30.0314 bits (66), Expect = 1.016e-15
Identity = 21/79 (26.58%), Postives = 36/79 (45.57%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L  +EL     L+  NK D P+A++  ++  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:  113 LLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VDS D +R  E++ EL
Sbjct:   19 KSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAEL 110          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D DR  EA+ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAEL 110          
The following BLAST results are available for this feature:
BLAST of CK936838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
SAR1_ASPNC7.373e-1739.13Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_ASPTN1.246e-1639.13Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]
ARL8A_MOUSE3.109e-1635.19ADP-ribosylation factor-like protein 8A OS=Mus mus... [more]
SAR1_SCHPO3.557e-1639.13Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR2_SOLLC4.621e-1640.86GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_ASHGO4.623e-1642.39Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_KLULA7.811e-1643.48Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_ASPNG1.016e-1538.04Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_CRYNE2.632e-1542.39Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_MAGGR4.489e-1541.30Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004517_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936838 ID=CK936838; Name=CK936838; organism=Citrus sinensis; type=EST; length=720bp
GGGGACCATTCTCCTCGTTTTCTCTCAAGCAGCCTCCTCCTTCAGATCTC
GTGAGATAACAGAAAATGGGGCTGTCATTTACGAAACTTTTTAGCCGGCT
TTTTGCCAAGAAAGAGATGCGAATTCTGATGGTGGGTCTCGACGCTGCTG
GTAAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATTGTGACAACC
ATTCCTACCATTGGTTTCAACGTGGAGACTGTGGAATATAAGAACATTAG
CTTCACTGTTTGGGATGTTGGGGGTCAGGATAAGATTCGTCCTTTGTGGA
GACATTACTTCCAAAACACTCAAGGACTTATCTTTGTGGTTGATAGCAAT
GATCGTGACCGTGTGGTTGAAGCTAGAGATGAACTGCACCGATGCTGAAT
GAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGA
TCTTCCAAATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTC
ACTCACTTCGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCT
GGGGAAGGACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAA
CAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCT
ATGTGAATGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTT
GGGCTTTACTACCTACGTTN
back to top