CK936838

Overview
NameCK936838
Unique NameCK936838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VD+ D +R+ E++ EL
Sbjct:   15 KHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAEL 106          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ EA+ E+
Sbjct:   19 KHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEI 110          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_PICGU (Small COPII coat GTPase SAR1 OS=Pichia guilliermondii GN=SAR1 PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERLAESKAEL 110          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.060e-14
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKEL 110          

HSP 2 Score: 27.335 bits (59), Expect = 3.060e-14
Identity = 22/82 (26.83%), Postives = 34/82 (41.46%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L+++ L     L+  NK D+P A +  E+   LGL               ++R    ++ S     G G  EG  WLS  I
Sbjct:  113 LLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYG--EGFKWLSQYI 192          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   ++ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAEL 110          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   72 LSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            LSF  L++     K  +IL +GLD AGKTT+L  LK G + + +PT     E +   NI F  +D+GG +  R LW+ Y+ +   +++++DS+ +DR VE++ EL
Sbjct:   11 LSFLGLYN-----KNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKEL 110          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.166e-14
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKEL 110          

HSP 2 Score: 26.5646 bits (57), Expect = 5.166e-14
Identity = 12/36 (33.33%), Postives = 20/36 (55.56%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 499
            +L+++ L     L+  NK D+P A +  E+   LGL
Sbjct:  113 LLSDESLASVPFLILGNKIDIPYAASEDELRYHLGL 148          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.712e-14
Identity = 34/93 (36.56%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VD+ D++R  E++ EL
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKREL 110          

HSP 2 Score: 26.5646 bits (57), Expect = 6.712e-14
Identity = 22/82 (26.83%), Postives = 33/82 (40.24%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL--------------HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L+++ L     L+  NK D+P A +  E+   LGL                +R    ++ S     G G  EG  WLS  I
Sbjct:  113 LLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYG--EGFKWLSQYI 192          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL10_HUMAN (ADP-ribosylation factor-like protein 10 OS=Homo sapiens GN=ARL10 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.460e-13
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  111 KEMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            ++  +L++GLD AGK+T L  L     +   IPT GFN   +  K+    + ++GG   +R  W+ +      L+FVVDS DR R+  AR ELH+
Sbjct:   76 EQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEFVSEVDVLVFVVDSADRLRLPWARQELHK 170          

HSP 2 Score: 31.187 bits (69), Expect = 1.460e-13
Identity = 15/35 (42.86%), Postives = 23/35 (65.71%), Query Frame = 2
Query:  404 DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 508
            D+  D  ++V ANKQDL  AM+  E+  +LGL ++
Sbjct:  173 DKDPDLPVVVVANKQDLSEAMSMGELQRELGLQAI 207          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 3
Query:   87 LFSRLFAKKEMRILMVGLDAAGKTTIL------YKLKLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            L++    K++  IL++GLD AGKTT L      Y L    +    PT+G NV T  V+ K I    WDVGGQ+ +R +W  Y+    G+IF+VDS+DR+R+ E    L
Sbjct:    8 LYNNWNKKEQYSILILGLDNAGKTTFLETLKKEYSLAFKALEKIQPTVGQNVATIPVDSKQI-LKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTL 114          
The following BLAST results are available for this feature:
BLAST of CK936838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
SAR1_PHANO7.658e-1540.22Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_NEUCR1.306e-1439.13Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_PICGU2.228e-1439.13Small COPII coat GTPase SAR1 OS=Pichia guilliermon... [more]
SAR1A_BRACM3.060e-1436.56GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1_DEBHA4.964e-1439.13Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1A_DICDI4.964e-1438.10GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1A_ARATH5.166e-1436.56GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1B_ARATH6.712e-1436.56GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
ARL10_HUMAN1.460e-1336.84ADP-ribosylation factor-like protein 10 OS=Homo sa... [more]
ARL3_YEAST1.886e-1340.74ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936838 ID=CK936838; Name=CK936838; organism=Citrus sinensis; type=EST; length=720bp
GGGGACCATTCTCCTCGTTTTCTCTCAAGCAGCCTCCTCCTTCAGATCTC
GTGAGATAACAGAAAATGGGGCTGTCATTTACGAAACTTTTTAGCCGGCT
TTTTGCCAAGAAAGAGATGCGAATTCTGATGGTGGGTCTCGACGCTGCTG
GTAAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATTGTGACAACC
ATTCCTACCATTGGTTTCAACGTGGAGACTGTGGAATATAAGAACATTAG
CTTCACTGTTTGGGATGTTGGGGGTCAGGATAAGATTCGTCCTTTGTGGA
GACATTACTTCCAAAACACTCAAGGACTTATCTTTGTGGTTGATAGCAAT
GATCGTGACCGTGTGGTTGAAGCTAGAGATGAACTGCACCGATGCTGAAT
GAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGA
TCTTCCAAATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTC
ACTCACTTCGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCT
GGGGAAGGACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAA
CAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCT
ATGTGAATGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTT
GGGCTTTACTACCTACGTTN
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