CK936838 | Citrus Genome Database

Overview


Name	CK936838
Unique Name	CK936838
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	720

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 8.085e-82
Identity = 96/109 (88.07%), Postives = 98/109 (89.91%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 109

HSP 2 Score: 132.109 bits (331), Expect = 8.085e-82
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  110 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 8.085e-82
Identity = 96/109 (88.07%), Postives = 98/109 (89.91%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 109

HSP 2 Score: 132.109 bits (331), Expect = 8.085e-82
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  110 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 8.085e-82
Identity = 96/109 (88.07%), Postives = 98/109 (89.91%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 109

HSP 2 Score: 132.109 bits (331), Expect = 8.085e-82
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  110 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 8.085e-82
Identity = 96/109 (88.07%), Postives = 98/109 (89.91%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 109

HSP 2 Score: 132.109 bits (331), Expect = 8.085e-82
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  110 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 8.085e-82
Identity = 96/109 (88.07%), Postives = 98/109 (89.91%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MG  F  L   L  KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RV EAR+EL R
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 109

HSP 2 Score: 132.109 bits (331), Expect = 8.085e-82
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWL+N + NK
Sbjct:  110 MLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 1.794e-81
Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MG+SF+KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF+NT+G+IFVVDSNDR R+ EAR+ L R
Sbjct:    1 MGVSFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQR 109

HSP 2 Score: 127.487 bits (319), Expect = 1.794e-81
Identity = 59/72 (81.94%), Postives = 68/72 (94.44%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 607
            MLNEDE+R+AVLLVFANKQDLP AM+AAEIT+KLGLHS+RQR WYIQ+TCATSGEGLYEGL+WLS N+ N+A
Sbjct:  110 MLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQRPWYIQATCATSGEGLYEGLEWLSTNLKNQA 181

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF_AJECA (ADP-ribosylation factor OS=Ajellomyces capsulata GN=ARF PE=1 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 2.558e-80
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MG++F+KLF R++ KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRDRVVEAR+EL R
Sbjct:    1 MGMAFSKLFDRIWGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNIQFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRDRVVEAREELQR 109

HSP 2 Score: 114.005 bits (284), Expect = 2.558e-80
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 589
            MLNEDELRDA+LLVFANKQDLPNAM+ AEIT +LGL SL +R WYIQSTCAT+G+GLYEGL+WL+N
Sbjct:  110 MLNEDELRDALLLVFANKQDLPNAMSPAEITQQLGLQSLTRRAWYIQSTCATTGDGLYEGLEWLAN 175

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF2_DROME (ADP-ribosylation factor 2 OS=Drosophila melanogaster GN=Arf102F PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.203e-79
Identity = 94/107 (87.85%), Postives = 99/107 (92.52%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            MGL+ + L +RLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR+ EA  EL
Sbjct:    1 MGLTISSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAEREL 107

HSP 2 Score: 120.168 bits (300), Expect = 6.203e-79
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML EDELRDAVLLVFANKQDLPNAM AAE+TDKL L+ LR RHW+IQSTCAT G GLYEGLDWLS  +A K
Sbjct:  110 MLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLRLNQLRNRHWFIQSTCATQGHGLYEGLDWLSAELAKK 180

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 193.741 bits (491), Expect = 2.341e-78
Identity = 93/107 (86.92%), Postives = 102/107 (95.33%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            MGL+ +KLF+ L  ++EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWR+YFQNTQG+IFVVDSNDRDR+ EAR+EL
Sbjct:    1 MGLTISKLFASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREEL 107

HSP 2 Score: 118.627 bits (296), Expect = 2.341e-78
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            MLNEDEL+DAVLLV ANKQDLPNAMNAAEIT+K+GLHS+  R W+IQ+TCAT+G+GLYEGL+WLSN +
Sbjct:  110 MLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSNQV 177

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF4_BOVIN (ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE=2 SV=3)

HSP 1 Score: 195.667 bits (496), Expect = 5.196e-78
Identity = 94/109 (86.24%), Postives = 101/109 (92.66%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MGL+ + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E  +EL +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQK 109

HSP 2 Score: 115.546 bits (288), Expect = 5.196e-78
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML EDELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:  110 MLQEDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180

The following BLAST results are available for this feature:

BLAST of CK936838 vs. ExPASy Swiss-Prot

BLAST of CK936838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216


Match Name	E-value	Identity	Description
ARF3_RAT	8.085e-82	88.07	ADP-ribosylation factor 3 OS=Rattus norvegicus GN=...	[more]
ARF3_PONAB	8.085e-82	88.07	ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ...	[more]
ARF3_MOUSE	8.085e-82	88.07	ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ...	[more]
ARF3_HUMAN	8.085e-82	88.07	ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ...	[more]
ARF3_BOVIN	8.085e-82	88.07	ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE...	[more]
ARF_ASHGO	1.794e-81	84.40	ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1...	[more]
ARF_AJECA	2.558e-80	89.91	ADP-ribosylation factor OS=Ajellomyces capsulata G...	[more]
ARF2_DROME	6.203e-79	87.85	ADP-ribosylation factor 2 OS=Drosophila melanogast...	[more]
ARF_CANAL	2.341e-78	86.92	ADP-ribosylation factor OS=Candida albicans GN=ARF...	[more]
ARF4_BOVIN	5.196e-78	86.24	ADP-ribosylation factor 4 OS=Bos taurus GN=ARF4 PE...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004517_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936838 ID=CK936838; Name=CK936838; organism=Citrus sinensis; type=EST; length=720bp
GGGGACCATTCTCCTCGTTTTCTCTCAAGCAGCCTCCTCCTTCAGATCTC
GTGAGATAACAGAAAATGGGGCTGTCATTTACGAAACTTTTTAGCCGGCT
TTTTGCCAAGAAAGAGATGCGAATTCTGATGGTGGGTCTCGACGCTGCTG
GTAAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATTGTGACAACC
ATTCCTACCATTGGTTTCAACGTGGAGACTGTGGAATATAAGAACATTAG
CTTCACTGTTTGGGATGTTGGGGGTCAGGATAAGATTCGTCCTTTGTGGA
GACATTACTTCCAAAACACTCAAGGACTTATCTTTGTGGTTGATAGCAAT
GATCGTGACCGTGTGGTTGAAGCTAGAGATGAACTGCACCGATGCTGAAT
GAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGA
TCTTCCAAATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTC
ACTCACTTCGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCT
GGGGAAGGACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAA
CAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCT
ATGTGAATGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTT
GGGCTTTACTACCTACGTTN