CK936838

Overview
NameCK936838
Unique NameCK936838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.597e-65
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 3
Query:   84 KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            KL S++F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDR+ EAR ELHR
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHR 105          

HSP 2 Score: 93.5893 bits (231), Expect = 5.597e-65
Identity = 40/67 (59.70%), Postives = 56/67 (83.58%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 592
            ++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL EGL WL++N
Sbjct:  106 IINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSN 172          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.993e-63
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 3
Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHR 392
            MG  F+++  R   K ++RILMVGLD +GKTTILYKLKLGE+VTT+PTIGFN+ETVEYK I+FTVWD+GGQ+KIR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHR 109          

HSP 2 Score: 89.7373 bits (221), Expect = 2.993e-63
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            +L ++EL  A +LVFANKQD  NA+  AE+ +KLGLHSL +R W IQ T A SG+GLYEGL+WLS  I NK
Sbjct:  110 ILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.073e-58
Identity = 70/108 (64.81%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH 389
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DR+  A++E H
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFH 108          

HSP 2 Score: 91.2781 bits (225), Expect = 2.073e-58
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:  110 ILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.990e-58
Identity = 70/108 (64.81%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH 389
            MG+ FT++FS +F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DR+  A++E H
Sbjct:    1 MGILFTRMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFH 108          

HSP 2 Score: 89.7373 bits (221), Expect = 5.990e-58
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:  110 ILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.090e-56
Identity = 68/103 (66.02%), Postives = 87/103 (84.47%), Query Frame = 3
Query:   78 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            F+ +FS    KKE RILM+GLD AGK+T+LYKLKLG++V+TIPTIGFNVET+EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+
Sbjct:   13 FSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEI 115          

HSP 2 Score: 83.9593 bits (206), Expect = 7.090e-56
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:  118 LLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.422e-53
Identity = 67/103 (65.05%), Postives = 86/103 (83.50%), Query Frame = 3
Query:   78 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            F+ +FS    KK+ RILM+GLD AGK+T+LYKLKLG+IV+T+PTIGFNVET+EYKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+
Sbjct:   13 FSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEI 115          

HSP 2 Score: 78.5666 bits (192), Expect = 2.422e-53
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA-TSGEGLYEGLDWLSNNIANK 604
            +L ++EL+   +L+FANKQD+ NAMN +EI D L L+S++ R WY+Q   A  S  G+YEG DW++N++ NK
Sbjct:  118 LLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSLNNK 189          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.366e-53
Identity = 65/103 (63.11%), Postives = 84/103 (81.55%), Query Frame = 3
Query:   78 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            F+ +FS    KK+ RILM+GLD AGK+T+L+KLKLG++V TIPTIGFNVET+ YKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+
Sbjct:   13 FSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEI 115          

HSP 2 Score: 81.6481 bits (200), Expect = 5.366e-53
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            +L +DEL+   +LV ANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:  118 LLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.196e-51
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 3
Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 107          

HSP 2 Score: 74.3294 bits (181), Expect = 2.196e-51
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML E+ELR A+L+VFANKQD+  AM ++E+ + LGL +L+ R W I  T AT G GL E ++WL   + ++
Sbjct:  110 MLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL1_BOVIN (ADP-ribosylation factor-like protein 1 OS=Bos taurus GN=ARL1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.732e-51
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 3
Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 107          

HSP 2 Score: 73.559 bits (179), Expect = 3.732e-51
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + ++
Sbjct:  110 MLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180          
BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 3.733e-51
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 3
Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            MGL F+K+ S +F   E R LM+GLD AGKTTILYKLKL E V TIPTIGFNVETV ++ I+ TVWDVGGQ KIR LW++YF NT  L+FVVDS+D +R+ EA++EL
Sbjct:    1 MGLFFSKISSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEEL 107          

HSP 2 Score: 77.411 bits (189), Expect = 3.733e-51
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            +L E EL D+ LLVFANKQD+PNA + AE+T  L L SL+ R W+I  T A SG+GLYEGL W+   +
Sbjct:  110 LLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKKQM 177          
The following BLAST results are available for this feature:
BLAST of CK936838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF3_DROME5.597e-6579.61ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF4_ARATH2.993e-6372.48Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF3_ARATH2.073e-5864.81ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARF1_BRARP5.990e-5864.81ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARFJ_DICDI7.090e-5666.02ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARFH_DICDI2.422e-5365.05ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARFK_DICDI5.366e-5363.11ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARL1_HUMAN2.196e-5164.49ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]
ARL1_BOVIN3.732e-5164.49ADP-ribosylation factor-like protein 1 OS=Bos taur... [more]
ARF11_CAEEL3.733e-5165.42ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936838 ID=CK936838; Name=CK936838; organism=Citrus sinensis; type=EST; length=720bp
GGGGACCATTCTCCTCGTTTTCTCTCAAGCAGCCTCCTCCTTCAGATCTC
GTGAGATAACAGAAAATGGGGCTGTCATTTACGAAACTTTTTAGCCGGCT
TTTTGCCAAGAAAGAGATGCGAATTCTGATGGTGGGTCTCGACGCTGCTG
GTAAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATTGTGACAACC
ATTCCTACCATTGGTTTCAACGTGGAGACTGTGGAATATAAGAACATTAG
CTTCACTGTTTGGGATGTTGGGGGTCAGGATAAGATTCGTCCTTTGTGGA
GACATTACTTCCAAAACACTCAAGGACTTATCTTTGTGGTTGATAGCAAT
GATCGTGACCGTGTGGTTGAAGCTAGAGATGAACTGCACCGATGCTGAAT
GAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGA
TCTTCCAAATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTC
ACTCACTTCGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCT
GGGGAAGGACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAA
CAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCT
ATGTGAATGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTT
GGGCTTTACTACCTACGTTN
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