CK936838 | Citrus Genome Database

Overview


Name	CK936838
Unique Name	CK936838
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	720

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL1_RAT (ADP-ribosylation factor-like protein 1 OS=Rattus norvegicus GN=Arl1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.865e-51
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 107

HSP 2 Score: 73.1738 bits (178), Expect = 4.865e-51
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + ++
Sbjct:  110 MLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL1_MOUSE (ADP-ribosylation factor-like protein 1 OS=Mus musculus GN=Arl1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.865e-51
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            MG  F+ +FS LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++ EL
Sbjct:    1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL 107

HSP 2 Score: 73.1738 bits (178), Expect = 4.865e-51
Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML E+ELR A+L+VFANKQD+  AM  +E+ + LGL +L+ R W I  T AT G GL E ++WL   + ++
Sbjct:  110 MLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.387e-50
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 3

Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSEL 494

HSP 2 Score: 82.0333 bits (201), Expect = 1.387e-50
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 2

Query:  386 APMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            A +L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  495 AKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.387e-50
Identity = 61/93 (65.59%), Postives = 77/93 (82.80%), Query Frame = 3

Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSEL 494

HSP 2 Score: 82.0333 bits (201), Expect = 1.387e-50
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 2

Query:  386 APMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            A +L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  495 AKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.156e-49
Identity = 60/93 (64.52%), Postives = 76/93 (81.72%), Query Frame = 3

Query:  108 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVG + K+RPLW+HY+ NTQ ++FVVDS+ RDR+ EA  EL
Sbjct:  382 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSEL 474

HSP 2 Score: 82.0333 bits (201), Expect = 1.156e-49
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 2

Query:  386 APMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 595
            A +L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  475 AKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.525e-49
Identity = 69/108 (63.89%), Postives = 88/108 (81.48%), Query Frame = 3

Query:   66 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH 389
            MG S +K+  +LF  KEM+ILM+GLD AGKTTILYKLKL +I T+ PT+GFNVETV YKN+ F +WDVGGQ ++RPLWRHYF  T  LIFV+DS+ R+R+ EA++EL+
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELY 108

HSP 2 Score: 64.6994 bits (156), Expect = 1.525e-49
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-SLRQRHWYIQSTCATSGEGLYEGLDWLSNN 592
            ++ E E+ + VLLV+ANKQDL +AM   E++D L L  +L+ + W +  + A SG+GL EGL W+SNN
Sbjct:  110 IIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISNN 177

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL1_YEAST (ADP-ribosylation factor-like protein 1 OS=Saccharomyces cerevisiae GN=ARL1 PE=1 SV=4)

HSP 1 Score: 138.658 bits (348), Expect = 1.525e-49
Identity = 65/109 (59.63%), Postives = 85/109 (77.98%), Query Frame = 3

Query:   66 MGLSFTKLFSRLF-AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELH 389
            MG  F+ +F +L+ + KE+RIL++GLD AGKTTILY+L++GE+VTT PTIGFNVET+ YKN+   VWD+GGQ  IRP WR Y+ +T  +IFVVDS D+DR+  A  ELH
Sbjct:    1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELH 109

HSP 2 Score: 77.411 bits (189), Expect = 1.525e-49
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 583
            ML E+EL+DA LLVFANKQD P A++A+E++ +L L  L+ R W I ++ A  GEG+ EGLDWL
Sbjct:  111 MLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL1_DROME (ADP-ribosylation factor-like protein 1 OS=Drosophila melanogaster GN=Arf72A PE=1 SV=5)

HSP 1 Score: 139.043 bits (349), Expect = 6.232e-48
Identity = 64/99 (64.65%), Postives = 79/99 (79.80%), Query Frame = 3

Query:   90 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            F  L   +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE V YKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDR+  ++DEL
Sbjct:    8 FRGLLGSREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSADRDRIGISKDEL 106

HSP 2 Score: 71.633 bits (174), Expect = 6.232e-48
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = 2

Query:  392 MLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            ML E+EL  A+L+V ANKQD+   M  AE+   LGL +L+ R + I  T AT GEGL + +DWLSN + ++
Sbjct:  109 MLREEELAGAILVVLANKQDMDGCMTVAEVHHALGLENLKNRTFQIFKTSATKGEGLDQAMDWLSNTLQSR 179

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.059e-47
Identity = 67/99 (67.68%), Postives = 80/99 (80.81%), Query Frame = 3

Query:   90 FSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            F  LF  +EMRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVE VEYKN+ F VWD+GGQ  IRP WR Y+ NT  +I+VVDS DRDRV  +R EL
Sbjct:    8 FRGLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQEL 106

HSP 2 Score: 67.781 bits (164), Expect = 1.059e-47
Identity = 35/73 (47.95%), Postives = 44/73 (60.27%), Query Frame = 2

Query:  386 APMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            A ML EDEL+ AVL V ANKQD+   +   E+   LGL +LR R   I  T A+ GEGL   +DWL+N +  K
Sbjct:  107 ATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQQK 179

[Close]

BLAST of CK936838 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.950e-46
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 3

Query:   78 FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDEL 386
            F  +FS    K+ +RILM+GLD AGK+T+LYKLK G+++ TIPTIGFNVE +EYKN+S  VWD+GGQ+ IR LWR Y Q T   IFVVDS DR+R  E + E+
Sbjct:   13 FVNIFSLFEGKRNIRILMIGLDGAGKSTLLYKLKFGDVIRTIPTIGFNVEIIEYKNLSMNVWDIGGQNNIRALWRQYDQRTDVFIFVVDSTDRERFDEVKQEI 115

HSP 2 Score: 70.4774 bits (171), Expect = 1.950e-46
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 2

Query:  398 NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 604
            N++E  +A LL+FANKQD+ N +  AE+ + L L+SL  + W++Q   A  G+G+YEG DW+ +N + K
Sbjct:  122 NKNESSNASLLIFANKQDMLNPITPAELVNSLDLNSLTNKKWHVQPCSAVRGDGIYEGFDWIVSNSSGK 190

The following BLAST results are available for this feature:

BLAST of CK936838 vs. ExPASy Swiss-Prot

BLAST of CK936838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216


Match Name	E-value	Identity	Description
ARL1_RAT	4.865e-51	64.49	ADP-ribosylation factor-like protein 1 OS=Rattus n...	[more]
ARL1_MOUSE	4.865e-51	64.49	ADP-ribosylation factor-like protein 1 OS=Mus musc...	[more]
ARD1_MOUSE	1.387e-50	65.59	GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2...	[more]
ARD1_HUMAN	1.387e-50	65.59	GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2...	[more]
ARD1_RAT	1.156e-49	64.52	GTP-binding protein ARD-1 (Fragment) OS=Rattus nor...	[more]
ARF3_YEAST	1.525e-49	63.89	ADP-ribosylation factor 3 OS=Saccharomyces cerevis...	[more]
ARL1_YEAST	1.525e-49	59.63	ADP-ribosylation factor-like protein 1 OS=Saccharo...	[more]
ARL1_DROME	6.232e-48	64.65	ADP-ribosylation factor-like protein 1 OS=Drosophi...	[more]
ARL1_CAEEL	1.059e-47	67.68	ADP-ribosylation factor-like protein 1 OS=Caenorha...	[more]
ARFF_DICDI	1.950e-46	59.22	ADP-ribosylation factor F OS=Dictyostelium discoid...	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004517_E05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK936838 ID=CK936838; Name=CK936838; organism=Citrus sinensis; type=EST; length=720bp
GGGGACCATTCTCCTCGTTTTCTCTCAAGCAGCCTCCTCCTTCAGATCTC
GTGAGATAACAGAAAATGGGGCTGTCATTTACGAAACTTTTTAGCCGGCT
TTTTGCCAAGAAAGAGATGCGAATTCTGATGGTGGGTCTCGACGCTGCTG
GTAAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATTGTGACAACC
ATTCCTACCATTGGTTTCAACGTGGAGACTGTGGAATATAAGAACATTAG
CTTCACTGTTTGGGATGTTGGGGGTCAGGATAAGATTCGTCCTTTGTGGA
GACATTACTTCCAAAACACTCAAGGACTTATCTTTGTGGTTGATAGCAAT
GATCGTGACCGTGTGGTTGAAGCTAGAGATGAACTGCACCGATGCTGAAT
GAGGATGAGTTGAGGGATGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGA
TCTTCCAAATGCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCTTC
ACTCACTTCGCCAACGCCACTGGTACATCCAGAGCACATGTGCAACATCT
GGGGAAGGACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCTAA
CAAGGCTTAAGTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCATCT
ATGTGAATGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTTTT
GGGCTTTACTACCTACGTTN