CK936835

Overview
NameCK936835
Unique NameCK936835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS1_DROME (Cyclin-dependent kinases regulatory subunit OS=Drosophila melanogaster GN=Cks30A PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.208e-24
Identity = 45/67 (67.16%), Postives = 59/67 (88.06%), Query Frame = 1
Query:  100 IQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 300
            I YS+KY+D+ +EYRHVVLP ++ K++PK  L++E EWR+IGVQQSRGW+HY IH+PEPHI+LFRRP
Sbjct:    5 IYYSDKYYDEQFEYRHVVLPKELVKMVPKTHLMTEAEWRSIGVQQSRGWIHYMIHKPEPHILLFRRP 71          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS2_MOUSE (Cyclin-dependent kinases regulatory subunit 2 OS=Mus musculus GN=Cks2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   97 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 303
            QI YS+KYFD+ YEYRHV+LP +++K +PK  L+SE EWR +GVQQS GWVHY IH PEPHI+LFRRPL
Sbjct:    5 QIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPL 73          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS2_HUMAN (Cyclin-dependent kinases regulatory subunit 2 OS=Homo sapiens GN=CKS2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   97 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 303
            QI YS+KYFD+ YEYRHV+LP +++K +PK  L+SE EWR +GVQQS GWVHY IH PEPHI+LFRRPL
Sbjct:    5 QIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPL 73          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS2_BOVIN (Cyclin-dependent kinases regulatory subunit 2 OS=Bos taurus GN=CKS2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   97 QIQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 303
            QI YS+KYFD+ YEYRHV+LP +++K +PK  L+SE EWR +GVQQS GWVHY IH PEPHI+LFRRPL
Sbjct:    5 QIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPL 73          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS1_CAEBR (Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis briggsae GN=cks-1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1
Query:  106 YSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 303
            YS KY DD YEYRHV +  DVAKL+PKNRL+SETEWR++G+QQS GW+HY IH PE H++LFRRPL
Sbjct:   10 YSNKYEDDEYEYRHVHVTKDVAKLIPKNRLMSETEWRSLGIQQSPGWIHYMIHGPERHVLLFRRPL 75          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS2_XENLA (Cyclin-dependent kinases regulatory subunit 2 OS=Xenopus laevis GN=cks2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  100 IQYSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 303
            I YS+KY D+ +EYRHV+LP ++AK +PK  L+SE EWR +GVQQS GWVHY IH PEPHI+LFRRPL
Sbjct:    6 IYYSDKYTDEHFEYRHVMLPKELAKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPL 73          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS1_CAEEL (Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis elegans GN=cks-1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1
Query:  106 YSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 303
            YS KY DD +EYRHV +  DV+KL+PKNRL+SETEWR++G+QQS GW+HY IH PE H++LFRRPL
Sbjct:   10 YSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHVLLFRRPL 75          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS1_DICDI (Cyclin-dependent kinases regulatory subunit OS=Dictyostelium discoideum GN=cks1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.358e-20
Identity = 40/65 (61.54%), Postives = 54/65 (83.08%), Query Frame = 1
Query:  106 YSEKYFDDTYEYRHVVLPPDVAKLLPKNRLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRP 300
            YS KY+DD YEYRHV+LP +++ L+P++ LL+E E R +G++QS GW HYA H+PEPHI+LFRRP
Sbjct:    7 YSSKYYDDKYEYRHVILPSEISSLIPRDVLLTEDECRKLGIRQSDGWEHYANHKPEPHILLFRRP 71          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS1_YEAST (Cyclin-dependent kinases regulatory subunit OS=Saccharomyces cerevisiae GN=CKS1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.420e-18
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  100 IQYSEKYFDDTYEYRHVVLPPDVAKLLPKN---------RLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPL 303
            I YS +Y DD YEYRHV+LP  + K++P +         R+L+E EWR +G+ QS GW HY  H PEPHI+LF+RPL
Sbjct:   28 IHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRPL 104          
BLAST of CK936835 vs. ExPASy Swiss-Prot
Match: CKS1_SCHPO (Cyclin-dependent kinases regulatory subunit OS=Schizosaccharomyces pombe GN=suc1 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.065e-16
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   64 SNLQKIE*KMGQIQYSEKYFDDTYEYRHVVLPPDVAKLLPKN---------RLLSETEWRAIGVQQSRGWVHYAIHRPEPHIMLFRR 297
            S  +++E  + QI YS +Y DD YEYRHV+LP  + K +P +         R+L E EWR +G+ QS GW  Y +H PEPHI+LF+R
Sbjct:   13 SERERLEPFIDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKR 99          
The following BLAST results are available for this feature:
BLAST of CK936835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CKS1_DROME1.208e-2467.16Cyclin-dependent kinases regulatory subunit OS=Dro... [more]
CKS2_MOUSE2.061e-2469.57Cyclin-dependent kinases regulatory subunit 2 OS=M... [more]
CKS2_HUMAN2.061e-2469.57Cyclin-dependent kinases regulatory subunit 2 OS=H... [more]
CKS2_BOVIN2.061e-2469.57Cyclin-dependent kinases regulatory subunit 2 OS=B... [more]
CKS1_CAEBR1.023e-2371.21Cyclin-dependent kinases regulatory subunit OS=Cae... [more]
CKS2_XENLA6.629e-2367.65Cyclin-dependent kinases regulatory subunit 2 OS=X... [more]
CKS1_CAEEL1.131e-2268.18Cyclin-dependent kinases regulatory subunit OS=Cae... [more]
CKS1_DICDI2.358e-2061.54Cyclin-dependent kinases regulatory subunit OS=Dic... [more]
CKS1_YEAST6.420e-1851.95Cyclin-dependent kinases regulatory subunit OS=Sac... [more]
CKS1_SCHPO2.065e-1645.98Cyclin-dependent kinases regulatory subunit OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_E02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936835 ID=CK936835; Name=CK936835; organism=Citrus sinensis; type=EST; length=664bp
GGGGACTCGATTCTCATTTCACTTGGCACTCGCTTATTATTCTCTGCAGT
CACTAAAAAGAGATCGAATCTTCAGAAAATCGAGTGAAAAATGGGTCAGA
TCCAGTACTCGGAGAAATACTTCGATGACACTTACGAGTACAGACACGTG
GTTCTTCCTCCTGATGTGGCAAAATTGCTTCCCAAGAATCGTCTCCTTTC
TGAAACTGAATGGCGTGCAATTGGAGTTCAGCAGAGCCGTGGATGGGTTC
ACTATGCCATTCATCGTCCTGAACCACACATTATGCTCTTCCGCAGGCCT
CTGAACTATCAGCAGCAGCAGGAGAATCAAGCTCAGCAAAACATACTTGC
CAAGTGATTTCACGTCGCTCTTTATGTCAAAGAATGGAAGGAATAGGAAG
TTTAGTGTTTTACCTAAAGGGTTTAAATGTCGTAGGATGTTTGGTACTGC
ATTGTATCTCTATACATGCAGAATTCCATGTTAGGCTTCGTTTGGTGAAT
GGATGTGTTGTTGACATCTTTGATGTCTTTGTTGCTGCCTGTTTAGATAT
GTGATGTTGATACTTCTTGTGTACTGCTTGTGGATGAAAAGGCACCGGTG
AATTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA
AAAAAAAAAAAAAA
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