CK936829

Overview
NameCK936829
Unique NameCK936829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_EUCGG (Photosystem I assembly protein ycf3 OS=Eucalyptus globulus subsp. globulus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_CHLSC (Photosystem I assembly protein ycf3 OS=Chloranthus spicatus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.172e-16
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_TOBAC (Photosystem I assembly protein ycf3 OS=Nicotiana tabacum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.531e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_NICTO (Photosystem I assembly protein ycf3 OS=Nicotiana tomentosiformis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.531e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_NICSY (Photosystem I assembly protein ycf3 OS=Nicotiana sylvestris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.531e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLR+IPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRVIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_DAUCA (Photosystem I assembly protein ycf3 OS=Daucus carota GN=ycf3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.531e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSI+ANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIIANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_PELHO (Photosystem I assembly protein ycf3 OS=Pelargonium hortorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.611e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRSRINGNFIDKTFSIVANILLRIIPTT GE+EAFTYYRDG
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEREAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_PIPCE (Photosystem I assembly protein ycf3 OS=Piper cenocladum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDG 227
            MPRS+INGNFIDKTFSIVANILLRIIPTT GEKEAFTYYRDG
Sbjct:    1 MPRSQINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDG 42          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSJ (Photosystem I assembly protein ycf3 OS=Oryza sativa subsp. japonica GN=ycf3 PE=2 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
BLAST of CK936829 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSI (Photosystem I assembly protein ycf3 OS=Oryza sativa subsp. indica GN=ycf3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 3
Query:  102 MPRSRINGNFIDKTFSIVANILLRIIPTTVGEKEAFTYYRDGAI 233
            MPRSRINGNFIDKTFSIVANILLRIIPTT GEK AFTYYRDG +
Sbjct:    1 MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKRAFTYYRDGML 44          
The following BLAST results are available for this feature:
BLAST of CK936829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
YCF3_EUCGG1.172e-1697.62Photosystem I assembly protein ycf3 OS=Eucalyptus ... [more]
YCF3_CHLSC1.172e-1697.62Photosystem I assembly protein ycf3 OS=Chloranthus... [more]
YCF3_TOBAC1.531e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana t... [more]
YCF3_NICTO1.531e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana t... [more]
YCF3_NICSY1.531e-1695.24Photosystem I assembly protein ycf3 OS=Nicotiana s... [more]
YCF3_DAUCA1.531e-1695.24Photosystem I assembly protein ycf3 OS=Daucus caro... [more]
YCF3_PELHO2.611e-1695.24Photosystem I assembly protein ycf3 OS=Pelargonium... [more]
YCF3_PIPCE3.410e-1695.24Photosystem I assembly protein ycf3 OS=Piper cenoc... [more]
YCF3_ORYSJ3.410e-1690.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_ORYSI3.410e-1690.91Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004517_F03 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0002_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936829 ID=CK936829; Name=CK936829; organism=Citrus sinensis; type=EST; length=321bp
GGGTCTGCTTTTATGTTATTTTGTACTGTACAATTCCTTTGTTTGTGGGA
TCATTTTCTCACAAGAGGTAATGAAACGAATTATAGAATGGATTTTTACC
TATGCCTAGATCGCGGATAAACGGAAATTTTATTGATAAGACCTTTTCGA
TTGTAGCCAATATATTATTACGAATAATTCCGACAACTGTAGGAGAAAAA
GAGGCATTTACCTATTACAGAGATGGTGCGATTTGATTAGTTTTTTATTT
ACCCCTTTCGGTCTTAGAAGAAAGAAAGACAATTCGGGATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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